Detailed information on CNT30555063


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696520Oryza glaberrimaOryza sativa96.6379.7899.54659forward
CNT3068141Oryza glaberrimaLeersia perrieri22.2936.4580.92152forward
CNT30596955Oryza glaberrimaOryza meridionalis8986.196.05607forward
CNT30106908Oryza glaberrimaOryza longistaminata37.110096.44253forward
CNT30103734Oryza glaberrimaOryza rufipogon91.3582.8599.52623forward
CNT30577979Oryza glaberrimaOryza barthii95.0181.3100648forward
CNT30117704Oryza glaberrimaOryza nivara97.3698.9699.55664forward

Expression of CNT30555063

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MFHLHAHLHYHLSRHETWAKTKLCSRPSLPLLQQGILSHIWLHY*

>peptide 2 (82 aa)
MNKRRFSTHSLILVTVLAVLIVLAMPTALLGLSIGRRALGDPHGVQSTAAMQQDAQAVGPACNTNDPNVPSPCPPPLSSLSP*

>peptide 3 (32 aa)
MPTSTIISLAMKPGQKQSYAQGLRFLCSSRGF*

>peptide 4 (36 aa)
MLKAFASFAPAGDFEPYMVTLLGDKAIRLYHENYDK*

Sequence

>CNT30555063
CTTTGAGAGAATTCCTTTGGATGGTCGGTATAAGAGATAGCAAGAAGGCAAGCTAAAACAAACCAGCTAAGCATAAGGTGAAGGGTAGATAAAATACAAC
GGTGAAGTTAAAAGAGAAACAGAGATGAACAAGCGAAGGTTCTCTACGCACTCCCTTATCTTGGTGACTGTGCTAGCAGTTCTAATTGTTCTTGCTATGC
CAACAGCTTTGCTGGGGCTCAGTATAGGGAGGCGTGCTTTGGGTGATCCACATGGAGTTCAATCCACAGCTGCCATGCAACAAGATGCTCAGGCCGTAGG
TCCTGCGTGCAACACAAACGATCCGAATGTTCCATCTCCATGCCCACCTCCACTATCATCTCTCTCGCCATGAAACCTGGGCAAAAACAAAGCTATGCTC
AAGGCCTTCGCTTCCTTTGCTCCAGCAGGGGATTTTGAGCCATATATGGTTACACTATTAGGTGATAAAGCTATACGTTTGTACCACGAGAACTATGACA
AGTAAACGTATAGATTAACCAACATCTGAATTGTGACGAGAATTCGTAGGTTCTTTCAGAGAATGTTGTACCTTGTGTTATATGGTGCATGTACCTCTAT
ATAGTTGTGTTTGAATAAAACGAAGACATGAATTTGGCGAGCCGACAGGAGTCATCTTGTTATTTGTTTTCTGTACTACGAA