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Detailed information on CNT30555040


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671247Oryza glaberrimaSetaria viridis26.3612.199.06213forward
CNT30226708Oryza glaberrimaHordeum vulgare27.116.3799.09219forward
CNT30688654Oryza glaberrimaTriticum urartu27.115.5999.09219forward

Expression of CNT30555040

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MQNCCLFLKGKPFELFLNSFLQKDFRASLGVLSTH*

>peptide 2 (48 aa)
MAERRWQAVIWIRCFTRRRFSSSRKNCMGVVLGGTSRMTVPRNPVRTV*

Sequence

>CNT30555040
GTGCCACCGCGTCCAGTAGACGACCTCTTCCGCTCATCCCCTTCGTCAGCTCTTTGATAGGGATACTATAACCTAGGTCCCTAAACTTGGAATGGATGGC
GGAGCGTAGGTGGCAGGCAGTTATATGGATACGGTGCTTTACCCGTAGACGCTTCTCCAGCTCTCGCAAGAATTGTATGGGAGTCGTCCTCGGGGGGACT
TCCCGAATGACTGTACCGAGGAATCCCGTCCGCACTGTCTAGAATGGCTCGTGGTCAACGATGAGAATTTCTTTCTTATGTGGATTCCTAACCTAAGAAA
GCTCTAACTCCAGCCAGCGAGGATGGGACTTTTTTGCATGATTCAAATGAAAAATCTTTCTCAACGATTTCTCCTCTACTAACAAGAGTAGACATGCAAA
ATTGTTGTTTGTTCCTGAAGGGAAAACCGTTCGAGCTGTTCCTGAATAGCTTCCTTCAAAAGGATTTCCGAGCTAGTCTGGGAGTCCTTTCAACTCACTG
AGGATTCTATCTAAAAAAGAAGGTCAACGGGGGAGACTACAGTAGCTCGAACTCAAACTATCTACGAAAAAGGTAAAGTCGTCTTTCCTAGGGTTCGACC
GAAAGGAGCTGTGTTCTATGGTTTGACGTTGTGGAGGTCCAGCACTCTTCTAAACGAAGAAAGAGGGGATTCGCGCTACCTCCTACTCCTACAGAAGATC
GATTGGCGCGAACTTCCGATCTATTCCTTATTCATTGTTGCCGCGTTGAGTTGCAAATCTAGGAATTCTCCTAATCACCTGGTCCAAGAGCTCTTCCTGA
AGAAGTAA