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Detailed information on CNT30555037


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30369237Oryza glaberrimaOryza glumipatula36.7614.881.99161forward
CNT30577766Oryza glaberrimaOryza barthii10064.79100438forward

Expression of CNT30555037

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MANESEATAAKKRAATGLGGSVAWCNGAQQWWWSSLRRRRWCLLRRKWIRGGGY*

>peptide 2 (55 aa)
MTPVIFRATYWLRCWAQLQKCEDDGELMKVACRRLETTVMQLFANYEWGFTNRLE*

Sequence

>CNT30555037
CGCGGGCGGATCCAGTCGGTGGTGATGGATCCAGGTGATGGCAAATGAATCCGAGGCGACGGCAGCTAAGAAGAGGGCTGCGACGGGTCTTGGGGGCAGT
GTAGCTTGGTGCAACGGAGCTCAGCAGTGGTGGTGGAGCTCGTTGAGGAGAAGGAGGTGGTGCTTGTTGAGAAGGAAGTGGATCCGAGGTGGTGGCTACT
AACAAGAGGGGCGGTGGCAGTGGAGGGTGGAGGACGTCGGATCTGGCCTCCTACGCAGTGCGACCACCATGACACCGGTAATTTTTAGGGCAACATATTG
GCTCCGGTGTTGGGCACAGCTGCAAAAGTGTGAAGATGATGGAGAGCTTATGAAGGTTGCATGTCGTAGGCTTGAGACGACAGTTATGCAACTTTTTGCA
AACTATGAATGGGGATTCACAAATAGACTTGAATAAAT