Detailed information on CNT30554995


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002216, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30371066Oryza glaberrimaOryza glumipatula53.8988.6193.68949reverse complement
CNT30104588Oryza glaberrimaOryza rufipogon70.390.794.431238forward
CNT30577934Oryza glaberrimaOryza barthii70.1970.7593.851236forward

Expression of CNT30554995

Peptides detected in this lncRNA

>peptide 1 (36 aa)
EGVGQGASQGSVDHAPISNGRRAVRLRNSHAAARKS*

>peptide 2 (34 aa)
GRSGPGGQPGVSRPRADLQWPSCRAAPKQPRSCS*

>peptide 3 (63 aa)
KEWARGPARGQSTTRRSPMAVVPCGSETATQLLVSRSHPSFVFPPPPVLISFKVIEPKFAIPL*

>peptide 4 (38 aa)
MNAVVCEAVHIVIIFCGKCILHLKYARTCASFGGFPRI*

>peptide 5 (32 aa)
MSLKSFECAVLPVQKLCHWVIPIYHGMSRFLN*

>peptide 6 (34 aa)
MINPSRRRCRKGKNSMVLMSSCSRSICSQTWRCL*

>peptide 7 (34 aa)
MIRNGGTRESSNRLALLRPSKCPTARTDQYPIGQ*

Sequence

>CNT30554995
GGAAGGAGTGGGCCAGGGGGCCAGCCAGGGGTCAGTCGACCACGCGCCGATCTCCAATGGCCGTCGTGCCGTGCGGCTCCGAAACAGCCACGCAGCTGCT
CGTAAGTCGTAGCCATCCCTCCTTTGTTTTCCCTCCTCCTCCAGTCCTTATCTCCTTCAAAGTGATTGAGCCGAAGTTCGCTATTCCTCTGTAGACATCA
AGAGCTAATCTCGTTTTCATCCCAAAACTTCTCCTGCCAGATCCAAGTCCGGCTGTGCAGCCGTTTCGCCGGCGTCAATCTTCTGCCACCGCACCACGGC
ACCGCAGGAACACCTCTCATCGATCGTGTTGAAGATTCCATCGGATTCGCAGGAACTGAAGTGGACCTAGAAGGCTATGCTGAAGCTTCAGAAGGGCACG
TTCCACAAGGCAAGCCACAGTTCCAATCTTTGATCATATTGAAACATAGTAGAGAACCACTTAATTATTTTCTGTATTGAGTATTTATAAAATTATTTTG
CGTATAAATTATTTTTTAATAAACTTGTTAGTTTAGTTATTACCCATTATTACATTGTTATTATTGGCCAAATCCATAAATTGCTATATCACGTCCTTTG
ATAACCTAGGTGTAGATTTATATACTTCACAATAATATTCTAGTGGATAAGACCATCAAATATCTATACTCATATACATGGTTTACCCGTCGTCACGTGG
TGGCGTGTCGGGTGATATAAAATGTGTTATTTGATATGACTCACTTGCCTGGAGTGATATGGAAGAATAATTCCGGGTGAAGATGAATGCTGTGGTATGT
GAGGCCGTGCATATTGTTATAATATTTTGTGGAAAGTGTATATTACACTTGAAGTATGCACGGACCTGTGCTAGTTTTGGTGGCTTTCCCCGGATATAAG
GACTACCCTCTTATGCCATGGAAAATGATGTAATTTGCGCCCATCCATAGGACTGAGTAATTAGACTTAGCCTAGTACATTGTCCCACTATATAAAAGAC
TGTAGGGTGGCTCTATGAGCAGGTTTGGGGTGGACATGTGGAAGGGGCTTCGGCCAGGTTGACATGATCCGCAACGGTGGAACCCGTGAAAGCAGCAACC
GTCTAGCCTTGCTTAGGCCCAGCAAGTGCCCGACTGCTAGGACGGATCAATATCCCATTGGGCAGTAACTAGTAGTAAGTGGGACTCTCGAACGGCTATG
TTGTCCTCAGCCTAGCTAGCTGTTGATATCTGGTGGGTAAAGCTGGGCAGTCTCTGCAGAGATGAGTCTTAAATCATTCGAATGTGCCGTGCTTCCGGTT
CAGAAGCTATGTCATTGGGTGATTCCTATTTATCATGGTATGAGTAGATTTTTAAATTAAAATATAGAATATGACGAAGATGAGGATGAATGGTGATTAA
TATTGCTGCTATTTTAACATGATGATTTACAACTATTTGCAAATGAAATGTTTTACAAAGTAGGGAAAAACTATTTATAATAGGCTTGTTATGAAACCTC
CTTGATAAACTATATTCTTTGTACGCCTTGCATATATTCTATTTGTATTATTTTGGATGTGGCTTACTGGGTACCTCGGTACTCACCTCTTGCATAAAAT
GTGGTTCAGATGATCAATCCTTCCCGGAGGAGGTGCAGGAAGGGAAAGAATTCTATGGTGCTGATGAGTTCTTGTTCTAGGTCGATCTGCTCTCAGACGT
GGCGTTGCCTGTGATGTTTTTATCCTATTTTGTGTATGGGTCTTTTGTTTGTAGGGAGTGT