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Detailed information on CNT30554880


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30194250Oryza glaberrimaSecale cereale26.5512.6797.64339forward
CNT30297416Oryza glaberrimaTriticum aestivum26.5524.5596.46339forward
CNT30681493Oryza glaberrimaTriticum urartu26.5520.2696.76339forward
CNT30328853Oryza glaberrimaAsparagus officinalis23.3418.5288.59298reverse complement
CNT30104298Oryza glaberrimaOryza rufipogon27.5614.06100352reverse complement

Expression of CNT30554880

Peptides detected in this lncRNA

>peptide 1 (30 aa)
KKGRERLIATAQPDETSIIYRTVPTCAYIV*

>peptide 2 (46 aa)
MGRQKDRIRKLPPQEARRRREVRLPGKEEDKKVLSSISTCFPRRWK*

>peptide 3 (52 aa)
MRHLLFTELCQRVPTLFDLPVPGIGFLNRKNETSTSLSPTVLSTNSANPDVR*

>peptide 4 (44 aa)
MDLPRGTRGFWCIQVFLLERRWVTKGILIVFPLLDTLPSANHRS*

Sequence

>CNT30554880
AAGAAAGGAAGAGAAAGACTGATTGCGACAGCTCAACCGGATGAGACATCTATTATTTACAGAACTGTGCCAACGTGTGCCTACATTGTTTGATTTACCA
GTTCCGGGTATTGGATTTTTGAATAGAAAGAATGAAACTAGTACCAGCTTATCGCCAACCGTGCTTTCTACCAACTCCGCCAACCCGGACGTTCGCTAAT
TAATACTGCGTCTTCAAAATTGTAACCTTCCCATGGCATATAAGCTACTAATACGTTTTTTCCTAAAGCAAGTTCCCCACCAACCGTAGCAGCCCCCTCC
GCTAAAATTTGTCCTTTTTTAATGGATTTACCCCGCGGAACCCGAGGTTTTTGGTGCATACAAGTATTTTTGTTAGAGCGCCGATGGGTAACTAAAGGAA
TACTTATAGTCTTCCCACTACTTGATACACTACCATCGGCAAATCATAGGAGCTAATCCTCACCCGGGGGGGGGGGGGGGGGGCGTGGAATAGGCGTACA
TGGAATTCTGGGCCTGCCCCTACTGGTAATTCACCGTCCCGCTCTTATGGGCAGACAGAAAGATCGGATTCGAAAACTGCCTCCTCAAGAGGCCAGAAGA
AGAAGAGAAGTGCGCCTTCCCGGTAAGGAAGAGGATAAAAAGGTGCTGTCATCTATCTCGACCTGTTTCCCGAGGCGTTGGAAATGAAGACCGGCTCGGA
GAATCACTGGCGTGCTTTCTCCCCCCCATCGTTTCGCCAACAAAGAAGTCATCCTTGATTTGACGATTGACCATTCCATCCCTACCGAGCCGCCTCTTCG
AAGTATTTACCTCTGCCTTTCTTTTTTTAGAACATACCCTTCAAATCAAAAAGCAAAAATCAAGAAAAGTTCCTCGTCTGTGATTTAATCGGCCCTAAGG
GAGTTTACTCGACCCATTCTCCAGTCTTCGTAGACTGGTTTCCCAGCCGTTGCAAAGACTTCGCGAGAACGGTCAGGGGCGCGGATTCGCCAAGCTAGGG
CAAACAAAGCCGTCCGGCCCTACCAGATTAAGAATGCGAAGGCCTTTCCTTCGAAAGGAGAAAAAAAAATAGCTATGCTATTGACCGACCCTTTCGTATT
TACTTCGAATCAATAGGCCTATCATTTTTCATGAGGCGGGCCAAATAGAGAATGAAATGCAAAAAATAGGGGAAGGGGGGATGGTCGCGCCTTTGATTTT
GTTTAAGGGCTGCTCGCCTGACTAAAGTACCAAAGGCTTTCACGGCTTCCACCCCTACCTTAGAATCTAAGCCCTTT