Detailed information on CNT30554764


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695434Oryza glaberrimaOryza sativa66.0348.2399.36313forward
CNT30103016Oryza glaberrimaOryza rufipogon63.0810099.33299forward
CNT30577361Oryza glaberrimaOryza barthii77.4354.8699.73367forward
CNT30603886Oryza glaberrimaOryza punctata74.6847.8496.05354forward

Expression of CNT30554764

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MLLAAGIEEEGAKSLTCRSVTVFPIPISIFH*

>peptide 2 (46 aa)
SIRGPITNSSSSLPDQISKFSSELFPPRETPRLLLGCSHQIHAAAV*

>peptide 3 (73 aa)
MAMQRVAAEAVEGISVHHIATSTSGGETEGGRGLPRRLAARSRGGSGQTRRLWQLRRRGCCLRRALRRKAPSP*

Sequence

>CNT30554764
CTCAATTAGAGGACCTATAACTAACTCGTCTTCTAGTCTTCCAGATCAGATCTCAAAATTCTCCTCTGAACTTTTCCCCCCTCGTGAGACTCCTCGTCTC
CTGCTCGGCTGCTCCCACCAGATCCACGCTGCTGCAGTCTGAACTGTCTGCAGTTCGGCTATCTTCCTGGGCGTGCTCTGTGGCTCAAGGTGAAAAATGG
CGATGCAGAGAGTAGCGGCTGAGGCAGTGGAGGGCATATCAGTACATCACATCGCCACATCCACGAGTGGTGGCGAGACGGAGGGCGGCCGTGGCCTTCC
TCGTCGGCTTGCAGCGCGGAGCCGTGGAGGCAGCGGGCAAACTCGACGGCTGTGGCAGTTGCGGCGGCGGGGATGCTGCTTGCGGCGGGCATTGAGGAGG
AAGGCGCCAAGTCCCTAACATGCCGGTCTGTGACTGTCTTTCCGATTCCTATATCCATCTTTCATTGACTTTCC