Detailed information on CNT30554735


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30370926Oryza glaberrimaOryza glumipatula83.3210098.861229forward
CNT30577292Oryza glaberrimaOryza barthii75.2510099.641110forward

Expression of CNT30554735

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MMVLCHGSDRCCSRLSKGPFCVTLCCTRNPKNASIASLPATTTSTKIQNNGVVSLYAALLFL*

>peptide 2 (53 aa)
MGGVASYPALSGCRDTGESKGGFLLDGGLSCGWLLLPRRTGEMVGADRSEPRIF

>peptide 3 (84 aa)
MHAGNNYHNTHSKSESHHIHISLSPPPNSLTSYTCILQQKKKKKQEENIFDRPIIGFTSLNSSSSLRCPGPDEIDHTLSLTASG*

>peptide 4 (37 aa)
MHTPTKKKEETRREHLRSPNHRFHQPELIKLLEMPWP*

>peptide 5 (29 aa)
FFLSLNRYAILNQCANEALDKQLSVVYPP*

>peptide 6 (30 aa)
MEDCPRKVDLSDADGRRAATGARAVTDAMA*

>peptide 7 (34 aa)
MLLRVLVRFVPLASSFSLASRVGSKLRGLKTLPG*

>peptide 8 (34 aa)
MHPDPCMQETITTTHTVSLNLITSISLSLLPPIH*

>peptide 9 (49 aa)
MRCWVGVANGRRRLLSSVIRMPGYGGIKGRVSIGWRSQLWLVAAATSDG*

Sequence

>CNT30554735
TTTTTTTTTGTCTTTGAATCGATACGCAATACTGAATCAATGCGCAAATGAAGCACTTGACAAGCAATTAAGCGTAGTTTATCCACCATAATTAAGATCG
AGACCATGAGATAGCTAGAACACTGCTGCTACCATGAGATAGTTTATCCCCCTGTAGTACTGTACATCAGAAATTCACCACTCAACTCACCCCCTCACCC
ATGCATCCAGATCCATGCATGCAGGAAACAATTACCACAACACACACAGTAAGTCTGAATCTCATCACATCCATATCTCTCTCTCTCCTCCCCCCAATTC
ATTAACATCTTATACATGCATACTCCAACAAAAAAAAAAGAAGAAACAAGAAGAGAACATCTTCGATCGCCCAATCATCGGTTTCACCAGCCTGAACTCA
TCAAGCTCCTTGAGATGCCCTGGCCCTGATGAAATCGATCACACGCTCAGCCTGACAGCGTCTGGATGATGGTGTTGTGCCACGGGTCAGACAGGTGCTG
CAGCAGGTTGTCGAAGGGCCCCTTCTGCGTCACGTTGTGCTGCACCAGGAACCCCAAGAACGCCAGCATCGCCAGCCTCCCTGCAACAACAACATCAACA
AAAATTCAGAACAATGGCGTCGTTTCATTGTATGCTGCTCTTCTTTTCTTATGATATATTGATGTGCAATGCTTTTACGTGTTTTGGTTAGATTCGTACC
GTTGGCGAGCTCCTTCTCCTTGGCCTCGAGGGTGGGCTCGAAGTTGAGGGGGTTGAAGACGCTGCCGGGGTAGCCGCACTCGTGCGGCGGGAGGCTGTAG
CTCTTGAAGATGGGGTCCTGGTTGACGCAGCCAGGGTTCTTGATGTCCTGCCACCGCCGGATCTCCACGTAGTGGAACAGGATGAACTCGATGACGAACA
GCGTCGACGACGACGCGAAGTAGGTGGGAGAAGGGAGGCCGGGGAGCCACTCTCCCTTGGCCTCCGCCCGAACATTACGCCTCGTAGTCGGTGCGCGGGC
GAGACGGATGGAGGATTGCCCTAGGAAGGTAGACTTGAGCGACGCCGACGGGCGGAGGGCTGCGACCGGGGCGCGGGCGGTGACGGACGCCATGGCTTAG
CTTCCCCGGCTTAGAGAGGGGAGGAAGCGAAGCGGGTGTAGTCACAAGGGTACGTTTTGGCCGGCACGGAGCAAAGGCGTGGCTTGTATTAAACTGTCCG
GGAGTGGCCGGCGCTGCCAGGTGGCCACGGCGGCGAGGGCGGCGACGGACGGCGGAGATCGGCGGTGGGGGTGGATCGGACGGCCAGGATGCGTTGTTGG
GTGGGTGTGGCCAATGGGAGGCGTCGCCTCTTATCCAGCGTTATCCGGATGCCGGGATACGGGGGAATCAAAGGGAGGGTTTCTATTGGATGGAGGTCTC
AGCTGTGGCTGGTTGCTGCTGCCACGTCGGACGGGTGAGATGGTTGGTGCAGATCGCTCGGAGCCTCGGATTTTT