CANTATAdb - search

Detailed information on CNT30554727

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30695815	Oryza glaberrima	Oryza sativa	6.56	21.65	98	50	forward
CNT30520559	Oryza glaberrima	Setaria italica	25.07	14.06	90.58	191	forward
CNT30452884	Oryza glaberrima	Saccharum spontaneum	25.07	31.31	88.48	191	forward
CNT30596713	Oryza glaberrima	Oryza meridionalis	15.22	21.13	99.14	116	forward
CNT30370891	Oryza glaberrima	Oryza glumipatula	43.04	35.46	97.56	328	forward
CNT30103183	Oryza glaberrima	Oryza rufipogon	36.09	11.22	91.27	275	forward
CNT30496500	Oryza glaberrima	Digitaria exilis	25.07	10.24	86.91	191	forward

Expression of CNT30554727

Sequence

>CNT30554727
GGTACTGTTATACGATTGATTCCTGTTATAAAAACGGGGGTCCACAACACTGGATCGGCCTGATATAAATATTGTTCATCAACATCTCTCTTTCTTGGCC
AGGAGAAAGATTCTTTTCCCCCCTTGAATGCAAGAGAAGAAATGAACAACACATCATCATCAGCATGAATAATGAGTTGTTTTCTAAACCAAAAATTGAT
TATTACTCTTGTTTAATTTGTGTTTCTCAATTATTGTAGTATCATATAAAAAGAGGTAATAGTAAGTATAGGTATTATTATTCGGTTGTATTAGGATGAG
TTTGAACTTTGAAGTGCAGGGATAGGCGCTCGGGTACCCTGCCGGCGGCGCCGCGTACCCGCCTGAGCCGTAGCCACCACCGTACGGGTACTGCCCGCCT
GAGCCGGAGCTGTAGGCCGGAGGCGGGGCGCCATAGGGGTCGCGTGTTCCGGCGGGTTGGCCGTAGGGAGCCGGGTAGGGCGAGGGGTCGTAGTAGCGCG
CGGACTCGCGGACGGCGAGGCGGAGGTCGAGGACGTCGCGGAGCGGGAGGCGGGCGGAGCCGACGAGCGGCTTGACGCCCTCGGCGGCGTTGGCGTGGAC
GACGTCGAGGTAGAGGAGGGCGTCGTCGAGGCGGGAGGAGGGGGGGAGAGGGAGGGTGAGCTTGTCGTCCCAGTTGGGGTTGTCGGCGTTGTCGAGGTCG
ACGCGGGTGGAGCACTTGGCGCCGTCGTCGACCCAGAGCACGGCGTAGGGCTTGAGGTCGCC