« Back to Oryza glaberrima search


Detailed information on CNT30554718


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695723Oryza glaberrimaOryza sativa31.3461.699.57231forward
CNT30106324Oryza glaberrimaOryza longistaminata63.529.21100468forward

Expression of CNT30554718

Peptides detected in this lncRNA

>peptide 1 (73 aa)
CTLSNAGLTTVSAAPLPSVRPISMMDKFLQSCKPAVMRKLQLSSRLLHVAEQDISSKGVVNMPKRGGCIIKVE*

>peptide 2 (41 aa)
MLISKMFCHKQQNFRPDHYFKVSHVYPTNMIFMRKALCDLD*

>peptide 3 (44 aa)
LHFVKCRPHNSFCCTSSQCKTYLHDGQILAKLQACSYEEIATFK*

>peptide 4 (31 aa)
MCMRINQENAPSHNTVPSTFKDLSKKCPDVH*

Sequence

>CNT30554718
CTGCACTTTGTCAAATGCAGGCCTCACAACAGTTTCTGCTGCACCTCTTCCCAGTGTAAGACCTATCTCCATGATGGACAAATTCTTGCAAAGTTGCAAG
CCTGCAGTTATGAGGAAATTGCAACTTTCAAGTAGGCTACTGCATGTAGCAGAACAAGATATATCTTCTAAGGGAGTGGTCAATATGCCCAAAAGAGGTG
GATGCATAATTAAGGTTGAATGAGTGATGGGTGGTTTGGTGCTTAAATTAAAAGATTAGGTATACACAGAGGTTGCTGACTTAAGAAATACTCAGAAGCA
GCATAATTTTCAGTATGAATATGGAGTTCGAGCTAGCAACTTCTTCTGCATAGTAGATTATGCTAATAAGCAAGATGTTTTGCCACAAACAACAGAACTT
CAGACCAGATCATTATTTCAAAGTTTCCCATGTTTATCCAACGAATATGATTTTTATGAGAAAAGCTTTGTGTGATCTTGACTGAAAAGAGCAACTGGTG
CTGATATGAAGAATGAAGGAGAGATACACTATTAGTTAATCAAGTTCTATTGTGATCTCTACAAAGAAGTATGGTCTTCCAGACAAATAAGTTCCTGTGT
CATCCATGATGTTTCCAGAGAGCAATTATGTGTATGCGTATCAATCAAGAGAATGCACCAAGCCATAATACTGTACCTTCAACCTTCAAAGATTTGTCAA
AGAAATGTCCCGATGTTCATTGAAGTGTCGAATAACT