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Detailed information on CNT30554501


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695200Oryza glaberrimaOryza sativa79.4197.6191.21694forward
CNT30370767Oryza glaberrimaOryza glumipatula97.689.2398.01853forward
CNT30604356Oryza glaberrimaOryza punctata97.3793.1189.78851forward

Expression of CNT30554501

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MSGTFAANAMTSAKWKHSERIDLLISLSLQTLLLTLDSTQAVVAR

>peptide 2 (42 aa)
YIYIYIYMLYYKKHACSYATALRKHIDSHMDTLVNNTRKTHR*

Sequence

>CNT30554501
TATATATATATATATATATATATGCTTTATTATAAGAAGCACGCCTGCTCATATGCAACGGCATTAAGAAAACACATAGATAGCCACATGGACACACTAG
TGAACAACACACGAAAAACACACAGATAGTCACTAGAGCAATAGTACATACCAAAAGTATGTGGGATCACACGTAGCAAACAACCAAGTCTACTCAGTTC
CTGGGCACAATTATAGCTATTGCTGGTGAAAGAGGCGGCTTTGGTAGAGATGTCTCTGGCTGAGGCTTGGGTTCTGGCTTAGGATCAGGCTGTAGCTCAG
GCTTGGGATTAGGATTTGGCTTGGGTTAGGACTCGGCTCAGGTTTGAGTTCAGGTTTTGGCTCCGGCTTAGGATTTGGGCTCAGCTCCGGTTGTGGCTTA
GGCTTTGGATTTGGTTTTGGGTCAGCTTTGGGGCTAGGTTGTGGGTTCGTTTGAGGATCTTGTTTTAGGTCAGGCTGTGGTGTAGGTTTTGGGTCAGGCT
GCGGCGATTGTTTTGGATCCAGCTGTGGGTTTGGTTGAGGATCTTGTTTTGGTTCAGGCTGTGGTGTAGGTTTTGGATTAGACTGCGGTGATAGTTTTGG
ATCTGGCTGTGGGTTTGGTTGAGGGTTAGGCTGTGGACTGGGCTTTGTCTCTAGTTGTGGTTTTGGTGTTGGGTCAGGTTTAGGCTTGGGATCTGCTGGC
TTTGGATCAGATTTAGCTTCAATCACGCGTCCATTGGCAATGTCAGGAACATTTGCTGCCAATGCAATGACAAGCGCCAAATGGAAGCACAGTGAGAGGA
TTGATCTCCTCATCTCGTTGTCACTGCAAACTCTACTACTCACTCTTGATAGTACACAAGCTGTGGTAGCTAGG