Detailed information on CNT30554473


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694654Oryza glaberrimaOryza sativa87.4295.9899.64549forward
CNT30369472Oryza glaberrimaOryza glumipatula87.5896.3299.27550forward
CNT30102681Oryza glaberrimaOryza rufipogon85.5195.3899.63537forward
CNT30577129Oryza glaberrimaOryza barthii85.3596.4100536forward
CNT30117222Oryza glaberrimaOryza nivara85.5196.0699.07537forward

Expression of CNT30554473

Peptides detected in this lncRNA

>peptide 1 (28 aa)
MCNACIIFFCILIYSTILLPLSYKKNHQN

>peptide 2 (40 aa)
MITSPDNGEPFQNFLVELSSLMKFKEIYRAERSAFRPNWE*

>peptide 3 (36 aa)
MNAADSSLLAAPPTPPSRGQYRLRLLIAHLIASVEN*

>peptide 4 (33 aa)
STKQYLGPASSLSHIAQPIRERQGLNLIHERGR*

>peptide 5 (29 aa)
KHQAVPGPSFFVEPYCAAHQRETRPQPYP*

Sequence

>CNT30554473
CAAGCACCAAGCAGTACCTGGGCCCAGCTTCTTCGTTGAGCCATATTGCGCAGCCCATCAGAGAGAGACAAGGCCTCAACCTTATCCATGAACGCGGCCG
ATAGCTCGCTGCTCGCTGCCCCTCCCACGCCTCCCTCGCGCGGACAGTATAGGCTAAGATTATTGATTGCCCATTTGATTGCATCTGTGGAGAACTGAAG
ATATCCAGCTGAATTTTCTTGTGGACATAACAATCAAAAGCATGAGAGGAATCGAACAAAGATTGAATTTGTGTTTTTGAGAAGCCTACTTAGGTCAGCC
ACATCACTCCGACGGATCACATTGGCTTTCCATGGTATGATTACGAGTCCTGACAATGGGGAGCCATTCCAGAACTTCCTGGTTGAACTATCCAGCCTGA
TGAAATTCAAGGAAATTTACCGCGCTGAGAGATCCGCATTCAGACCAAACTGGGAGTAAGCGTGATCATTCAGAAACAGCGTGCTACAGATCAACACCAA
AATTCCTAAATTGCATGTCCTTGCCAAAATTGTAATAGACAATGTGTAATGCTTGTATTATATTTTTCTGCATTCTAATATATTCGACAATACTCTTGCC
GCTTTCATATAAAAAAAACCACCAAAAT