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Detailed information on CNT30554471


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6Z4N4|40G3_ORYSJ, E-value = 2e-52

BLAST vs NONCODE:
NONZMAT000139, E-value = 3e-63

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694973Oryza glaberrimaOryza sativa56.8137.2299.68313forward
CNT30672063Oryza glaberrimaSetaria viridis41.9244.7790.91231forward
CNT30522081Oryza glaberrimaSetaria italica39.933892.27220forward
CNT30180108Oryza glaberrimaSecale cereale37.0293.1592.65204forward
CNT30289434Oryza glaberrimaTriticum aestivum43.0140.9392.83237forward
CNT30221546Oryza glaberrimaHordeum vulgare37.2189.9194.15205forward
CNT30392320Oryza glaberrimaTriticum turgidum35.219788.14194forward
CNT30436341Oryza glaberrimaAegilops tauschii33.3960.5394.02184forward
CNT30251924Oryza glaberrimaAvena sativa42.8343.3893.22236forward
CNT30658643Oryza glaberrimaTriticum dicoccoides42.8353.2791.1236forward
CNT30450022Oryza glaberrimaSaccharum spontaneum42.4722.6393.59234forward
CNT30680880Oryza glaberrimaTriticum urartu42.8345.6591.1236forward
CNT30721558Oryza glaberrimaTriticum spelta40.1198.6687.78221forward
CNT30341886Oryza glaberrimaEragrostis tef36.373.889.5200forward
CNT30361377Oryza glaberrimaSorghum bicolor39.9319.5491.36220forward
CNT30596591Oryza glaberrimaOryza meridionalis42.6549.8997.87235forward
CNT30370660Oryza glaberrimaOryza glumipatula99.6495.6498.18549forward
CNT30104991Oryza glaberrimaOryza longistaminata39.9392.8390.45220forward
CNT30148227Oryza glaberrimaBrachypodium distachyon31.0367.8689.47171forward
CNT30102628Oryza glaberrimaOryza rufipogon88.0238.2298.56485forward
CNT30577143Oryza glaberrimaOryza barthii89.1196.8499.8491forward
CNT30496422Oryza glaberrimaDigitaria exilis41.3836.9588.6228forward
CNT30117165Oryza glaberrimaOryza nivara82.03100.8998.45452forward
CNT30593977Oryza glaberrimaEragrostis curvula39.9399.190.91220forward
CNT30604388Oryza glaberrimaOryza punctata28.3146.9998.08156forward
CNT30556620Oryza glaberrimaPanicum hallii40.1122.4694.12221forward
CNT30551356Oryza glaberrimaOryza brachyantha28.4945.3897.45157forward

Expression of CNT30554471

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MLFTMRMQRKPLPTSLLSVHSTDSSWYSGL*

>peptide 2 (38 aa)
MLQIKDMHSIYASLIKPQLYVFIYVSPSERSSYCQVIN*

>peptide 3 (44 aa)
DLKNSCAYASDQRHAQHICKFNQAPTVCVYICVAQREELLLPGN*

Sequence

>CNT30554471
TGACCTGAAAAATTCGTGCGCATATGCTTCAGATCAAAGACATGCACAGCATATATGCAAGTTTAATCAAGCCCCAACTGTATGTGTTTATATATGTGTC
GCCCAGCGAGAGGAGCTCTTATTGCCAGGTAATTAATTAACTTGTACAGATACAAGATACAAGCACACCACACGATAATCATACGGTACGGACGAGCATA
AGTTACTCTTAGCTACGTATATAGGTGGGTAGCTAGCAGAGAATAATTATTCTGCACCAGATTCGTTAATATCAACTTGAGCCTTGATAGAGAGCTGGAT
CGATGTATCGATCAGCTCAGTAGTAGGGCTGGATCTTCCAGCGCTGGTTGTCGCCCTCGCACCACTTCCAGAGCACGATGTCGGTGCCGTCGCGGACGCC
GCCGTGGTACTTGTCGCCGTGGAAGGCGTCGAAGTTGAGGTAGATGTTGTTCACCATGCGGATGCAGCGGAAGCCCTTGCCCACATCCTTGCTCTCCGTC
CACAGCACAGACTCGTCCTGGTACTCTGGGTTGTAGGGAACCAGCTTCACC