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Detailed information on CNT30554445


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694748Oryza glaberrimaOryza sativa73.7102.3295.47751forward
CNT30577121Oryza glaberrimaOryza barthii10096.599.121019forward

Expression of CNT30554445

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MSGTFAANAMASAKWKHSERIDLLISLSLQTLLLT

>peptide 2 (44 aa)
NSPEIVTHRDTFSFYSWYICTHIHNTRAYICFIIRSTPAQMQHH*

>peptide 3 (35 aa)
MLYYKKHACSDATSLRKHIDSHMDTYTSEQHMTNT*

Sequence

>CNT30554445
AAACAGCCCAGAAATAGTGACACACAGGGATACATTCTCTTTTTATTCATGGTATATATGTACGCACATACATAACACACGTGCATATATATGCTTTATT
ATAAGAAGCACGCCTGCTCAGATGCAACATCATTAAGAAAACACATAGATAGCCACATGGACACATACACCAGTGAACAACACATGACAAACACATAGAT
AGTCACTAGAGCAATAGTACATACCAAAACTATGCGGAATCATACGTAGCAAACAACCAAGTCTACTCAGTTCCCGGGCACAATTACAGCTATTGCTGGT
GAAAGAGGTGGTGGCTTTGGCAGAGATCGCTCTGGCTGAGGCTTGGGTTCTGGCTTAGGATCAGGCTGTGGCTCCGGCTTAGGATTAGGATTTGGCTTGG
GGTTAGGACTTGGCTCAGGTTTGGGTTCAGGCTTTGGCTCTGGCTTAGGATTTGGGCTCGGCTCCGGTTGTGGCTTAGGCTTTGGATTTGGTTTTGGGTC
AGCTTTGGGGCTAGGTTGCGGGTTCGGTTGAGGATCTTGTTTCGGGTCAGGCTGTGGCGTTGGTTTTGGGTCAGGCTGTGGGTTCGGCTGAGGATCTTGT
TTTGGGTTAGGTTGTGGGTTCGGTTGAGGATCTTGTTTTGGGTCAGACTGTGGTGTAGTTTTCGGGTCAGGCTGCGGAGATGGTTTTGGATCCGGTTGTA
GGTTTGGTTGAGGATCTTGTTTTGGTTCAGGCTGTAGTGTAGGTTTTGGGTCAAGCTGCGGTGATGGTTTTGGATCTGGCTGTGGGTTAGGTTGAGGGTT
AGGCTGTGGACTGGGTTTTGTCTCTCGTTGTGGTTTTGGTGTTGGGTCAGGTTTAGGCTTGGGATCTGCTGGCTTTGGATCAGATTTAGCTTCAATCACG
CGTCCATTGGCAATGTCAGGAACATTTGCCGCCAATGCAATGGCAAGCGCCAAATGGAAGCACAGTGAGAGGATTGATCTCCTCATCTCGTTGTCACTAC
AAACTCTACTACTCACTCT