Detailed information on CNT30554357


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671641Oryza glaberrimaSetaria viridis28.6429.3689.06128forward
CNT30252593Oryza glaberrimaAvena sativa33.7827.1682.12151forward
CNT30370667Oryza glaberrimaOryza glumipatula10086.9699.55447forward
CNT30102728Oryza glaberrimaOryza rufipogon100.2288.5499.11448forward
CNT30117104Oryza glaberrimaOryza nivara10072.6896.42447forward
CNT30551372Oryza glaberrimaOryza brachyantha56.3852.6184.92252forward

Expression of CNT30554357

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MISIQDSDRGVSVNEGEGEDQVRLTGSKRKFLSDGVRLPCAASATSGRTIAAAMAAAVSPAVALSFIDAD

Sequence

>CNT30554357
GTGGCTTTTTTATCTAGTGTAGTTCATATTTACAGCAGTTAAAAAAAAATACAGAAGCACTGATCAGTAGCTTCGGGAGCAAACAATATTTGGAAACTAG
TAGCCTTTTGCGCAGGTATAGTGTCAAGAACAATATACAGCAATAGAATTATGGAAGCAATTAACCATCAACAACTCCATATCTCCATATCGTAAATCAG
TTTACAGAATCTCCAAAACAACACTGCAAAGAGACGATGATCTCGATACAAGACAGCGATCGAGGCGTGTCTGTGAATGAAGGAGAAGGAGAAGATCAGG
TCCGCTTGACGGGGTCGAAGAGGAAGTTCTTGAGCGACGGCGTCAGGCTGCCCTGCGCGGCCTCCGCGACGTCGGGGAGGACCATCGCCGCCGCCATGGC
CGCGGCCGTCAGCCCGGCCGTCGCCCTCTCCTTCATCGACGCCGACG