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Detailed information on CNT30554340


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000896, E-value = 7e-115

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30102163Oryza glaberrimaOryza rufipogon33.1634.1195.05323forward

Expression of CNT30554340

Peptides detected in this lncRNA

>peptide 1 (57 aa)
TVHLPAQAEPEPAVPCIVPPPPPSKSRLPVAPFSKLVEGKYSSYLPLSLPSKIGANR*

>peptide 2 (37 aa)
YCSSSSSGRARASRAVHSAAASSFQISPPRCSFFQIS*

>peptide 3 (38 aa)
MDLYIKLSVCVPRLIPGRGFYAQISSEITSEFPGVTIA*

Sequence

>CNT30554340
TTACTGTTCATCTTCCAGCTCAGGCAGAGCCCGAGCCAGCCGTGCCGTGCATAGTGCCGCCGCCTCCTCCTTCCAAATCTCGCCTCCCCGTTGCTCCTTT
TTCCAAATTAGTTGAGGGGAAATATTCGTCTTATCTTCCTCTATCTTTACCCTCAAAAATCGGAGCTAATCGTTGAGTATCTTATCCGAATCGAACTCGT
TTTGAGTTTATCTCCAAAACCGAGTTTTTGATTTCCCGGAGCGATTTCTTGCGGGAGGAGTCCGATCTCTTCGATCCAAGGCTATAAATAGGACCCCCTA
GTCCTCCTCTTTCGTTTGCCCCCTCTCCCATGATCTCCCGTGCCTCGTAGCGCCGCCGCCACGTGCTCCACCCCGCCATCATCGCCGGCCGAGCTCCATC
CGCGTCGCGCCGCCGCCTCCGTCGTCGCCGCCGGTCACCGTCACCACCGTTAGGTGCGTGGGAGGGTGGAGAAGCCCGGCCGCCTGTCCCCCGAAGCCGC
CGACCACCGCAGCTCCGGCGCCACCGCCGACCGAAGCCGCCGTCCACCTCGCCGCCGGCCGTCGTCGTTCGTCGTTTGGTTCAAGGTTTCCGACGTTCCG
GAGGGGAGCGTTTTCGTTGAGGAAGGTTCAGAAGTGTTTGCGGAAGATCAAGTTGAAGAAAAAGGATCCAGAAGGAGAAGACGTTTGGCTTATACCCCAA
TTGAGTTGCCTGTGGGAGTGGACCTGAAGCCATCGCTAGACCGTTAATTCCGCTGCTGTTGTTTTCTTTTTTTTTTAAGTATGTAACGTTATTATTAAGA
TGGATTTGTATATTAAATTGTCAGTTTGTGTACCTCGGCTGATTCCTGGACGAGGATTTTATGCACAAATTAGTTCGGAAATTACTAGTGAATTTCCGGG
CGTGACAATTGCTTAGTGCACCATTCAGTCTGGTAATTCAGCCCTCTTCTGGGAATATCTATGGAATGATGAAC