Detailed information on CNT30554321


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7F1U0|PER22_ORYSJ, E-value = 9e-31

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695083Oryza glaberrimaOryza sativa35.3933.7387.21172forward
CNT30671714Oryza glaberrimaSetaria viridis18.524588.8990forward
CNT30221499Oryza glaberrimaHordeum vulgare24.4940.8982.35119forward
CNT30659540Oryza glaberrimaTriticum dicoccoides25.134.1784.43122forward
CNT30596630Oryza glaberrimaOryza meridionalis34.3621.74100167forward
CNT30370682Oryza glaberrimaOryza glumipatula34.3620.6785.63167forward
CNT30102748Oryza glaberrimaOryza rufipogon63.7940.5299.68310forward
CNT30577207Oryza glaberrimaOryza barthii34.3619.1185.63167forward
CNT30117253Oryza glaberrimaOryza nivara26.9517.54100131forward
CNT30604331Oryza glaberrimaOryza punctata33.5423.6697.55163forward

Expression of CNT30554321

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MGFLICFKHFVLIRENTLSKHFRLVKYYYCDIYGPALLPNLCLLLYPV*

Sequence

>CNT30554321
GGGACAGTTAGAGATTATCATTCATGCATTCCTTGATAACTTCAAAACCATACTGATCGGTACATAACATGGGCTTCCTGATCTGTTTCAAACACTTTGT
GCTGATCAGAGAAAACACTCTTAGCAAACATTTCAGACTAGTAAAATACTACTACTGTGACATATATGGCCCAGCCTTACTCCCAAATTTGTGTTTGCTT
TTGTATCCAGTTTGATTCTTTACTTAATTATTAGTTCACTTTGGAGCAGCTAAGCCTGATCTGTCCCTGGCTCCCGGTGAGTGGTCCGAGGTTGGCCATC
TTCACCATGGCCGACGAGAAGGCGTTGTCGAAGGAGTAGGGCGTCGTCGTGTCCAGCGCCGCCAGGTTGCTGTCGCCGGTGCCGGCCGTCGGCGGGCAGT
TGGCCCTGAGCGACGCCGCGTAGCCGGCGTCGATGTTGGTCTCGTTGTAGATCCTTCCCCTGAAGTTGGTGCACTGCGCCTGCCCG