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Detailed information on CNT30554195


BLAST search results

BLAST vs Swiss-Prot:
sp|Q84VG1|CHMP1_ORYSJ, E-value = 6e-94

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673796Oryza glaberrimaSetaria viridis7.4510094.71227forward
CNT30513024Oryza glaberrimaJuglans regia12.8752.6281.63392forward
CNT30371693Oryza glaberrimaArabidopsis thaliana3.7120.8185.84113forward
CNT30306600Oryza glaberrimaTriticum aestivum3.3532.1897.06102forward
CNT30254428Oryza glaberrimaAvena sativa10.7360.8993.88327forward
CNT30669382Oryza glaberrimaTriticum dicoccoides7.8440.196.23239forward
CNT3060118Oryza glaberrimaArabidopsis lyrata3.7138.4489.38113forward
CNT30141866Oryza glaberrimaLolium perenne17.9289.893.04546forward
CNT30347540Oryza glaberrimaEragrostis tef20.4152.5888.26622forward
CNT30368840Oryza glaberrimaSorghum bicolor6.7957.6697.58207forward
CNT30370517Oryza glaberrimaOryza glumipatula10.2462.5399.68312forward
CNT30571602Oryza glaberrimaVitis vinifera13.4637.1782.68410forward
CNT30705067Oryza glaberrimaPrunus avium7.0922.1582.87216forward
CNT30106582Oryza glaberrimaOryza longistaminata61.984.293.531886forward
CNT30116955Oryza glaberrimaOryza nivara23.389.9999.72710forward
CNT30111719Oryza glaberrimaFicus carica6.220.9186.77189forward

Expression of CNT30554195

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MKIQIGLERLHRIEKRYACKSLYTHCLDKCNKVHYVLINATKF*

>peptide 2 (49 aa)
MQQSSLCPDKCNKVLVTFVQVLGLVAIVNLLVKILVRWFDAKFFLAKIL*

>peptide 3 (59 aa)
MVSLMFPQILNHSSIAIIFRCAAAFRKAKVYNSRKQRGLVDTRYTPHNHLHILHQIDKN*

>peptide 4 (52 aa)
LPNLFMALKQGKHPVKRWTTSTFLFKRAGLGYSDTETFSSSHIMDLYHTARF*

>peptide 5 (81 aa)
MRLLTSVSGVEREVEPAMAPSMNSAWTSMLTNWRSKLSMVSDIFCRFPVASAESSDLTMLAMDLPMTCIFAWVSRREARRR*

>peptide 6 (69 aa)
ATEFVHGIKARKTSSEKMDNFNVSVQTGRLRIQRHRDVLKLTYYGFVSHSKVLMKSTDPIWDINTRILA*

>peptide 7 (67 aa)
MISSEHTNDHWSHFIHAVKGAPKLKQNNIILVICYPPHFLGSTRRVNHYQNIKSVVSHNIGLPHVSC*

>peptide 8 (63 aa)
MFPFSIAFFTLSFCSFSSFSHLRACRCSDLEVNLRSKIWVISFSGFPIAAADELAPIVDLARV*

Sequence

>CNT30554195
GCTACCGAATTTGTTCATGGCATTAAAGCAAGGAAAACATCCAGTGAAAAGATGGACAACTTCAACGTTTCTGTTCAAACGGGCAGGCTTAGGATACAGC
GACACAGAGACGTTCTCAAGCTCACATATTATGGATTTGTATCACACAGCAAGGTTTTAATGAAGTCCACAGATCCCATATGGGATATCAACACACGCAT
TTTAGCATAACAGTATTTACGAATCTAACAAATATGAGTAGCCTTTGACGTGACAATGGCTCATAGCAGCTTGAGAATCATATCTGCAAAATGAGATACG
GTGGAAGTTAGTTAACGGGGAAAAAGGTTTAATGAATCAATGCATATAGGCATAGGCCATTTCCCATATATGGAAAGTGCAGTGAATATGTAATATGCAT
GCATTAAAGAATGCATTTAGTGAACTCAAATTTGTGGCGTGCATTTACGCTTTAAGTTAGCAAGCATGTGAAAATGTGATATAGTAAAGTTTGAAGACAT
TTGTATACCCTTCTATGATTTTGCATGAAAATACAAATTGGCCTTGAAAGACTGCATCGCATAGAGAAAAGGTATGCGTGCAAGTCACTCTATACACACT
GTCTCGATAAATGCAACAAAGTTCACTATGTCCTGATAAATGCAACAAAGTTTTAGTAACGTTCGTCCAAGTGTTAGGGCTTGTAGCCATTGTTAACCTC
CTTGTCAAAATTTTGGTAAGATGGTTTGATGCCAAATTTTTTTTGGCAAAGATACTTTAACCTTTTGTCTAGCCTTCCCAAAGTATTGGCATTGTGAATT
TTTGCAACAGACCAAATGAGCCTATAAAAGCTTTGCCATTACCAATATTTTGGTGTGGTTGGGTTGAGCCTTATATGGTGTTTGGAAGTAAAATCACCAG
AAAATGCAGTCACTCCAAGATGTAGCACTAAGGGGGTGGTGTTTCACATAAAGGGAAGGTCGACACAACTACAAAGGGCACCACAGCAGGATGTTATGAA
AGCCAGCCCTTTCAACACAAACAAGGGTAACAATAGTAATCAAATTACAAATAAATGGAGATGAGATTTCATCACTGAGGAACTCAACATAAAAAATACA
TCATGAAAAATGTTACTTTATATATTCGGTGAAGAGCTTGTGCTACTTACATTAACAAATGAACATTCTGTGAGTAGGATTAAATAAACAAACTGATAGT
AGGATTAAATAAACATTTTGTACTACAAATATTCTGTGAGTGGCTTCCTGGCATGTAAGGTGCAGAAACTGCTTGCGTACTGATTTAACTGTCAAATATA
CAATTGAGAAGGCAACATAAAAACACCAAAAACCTTTTAATCTAATAGCTAGCCCAGAGAGTTTAAACATAATTTTACATCCAAAACATGCTGAACATTC
AAGAGTAAAAAGACAACTTTTATGTTTCAGCAGGTAAAACAGTACAATTTACACAAAATGAATAGGTGTTATCATGATATCATCTGAGCACACCAATGAT
CACTGGTCTCACTTCATACATGCTGTTAAGGGTGCTCCTAAGTTAAAGCAGAATAATATTATCCTTGTTATTTGCTATCCTCCTCACTTTTTAGGTAGTA
CAAGAAGAGTAAATCATTATCAAAATATCAAATCCGTAGTAAGTCATAATATAGGACTACCGCATGTTAGCTGTTAAAAATCCTGAAAGTCATTTTATGT
CCTATCACAATTCACAACACTACATACCTCCCAAGTAATCAGCCAACAGAAGAGATGATTTGCCGCATGTATGATGCTATTTGATATTGGAATACACAGA
AATTTCCATTGGTGAAATTAAGGCTGTTTGGCTGCCTGGGCTGCATCTGCGCCACAGACAACAGCAACAGTGCTGCAAGCAGCAAGGAAACAGCGGGCAG
CAGCAGCTGCAGCCGCAGCCACAGCCCAGGTAGCCGAATGGCCTGATTGTTAGGTCAGTGATAACAGCATGACTCATTGTTTTATTGGCATCCATGTTAT
GCAATGACGATGTCTTCAGCACAGGGAGCATGACATGAATATGCAACACCTCAGTAACCCTCGCCATTTGACAGGTAAGATGTGAGGTATGGTTAGTCTT
ATGTTTCCACAAATCTTAAACCATAGCAGCATAGCCATTATTTTTCGGTGCGCAGCTGCATTCAGAAAGGCCAAAGTATATAACTCAAGGAAACAGCGTG
GTCTTGTAGATACTAGATACACACCACATAACCACCTTCACATTCTCCATCAAATTGATAAAAACTAAAACAATATTTCACAAGTGCAACAGAAGGTAAG
TATTCATGTATGATGCTAGGGGTGGCTATGTTTATCACCTGAAGTGAAATCCCTCAGCCGCGGGCCTTAAGCTCAGCCAGGCGGCGGGAGAGGTCGTCTT
CATCAACAGCCTTCTCCTTCTCCTTGGCAGCTGGTATGGCGTGAGCGGCGGCCTGCGGCAACCCAACGGAGACCTCAAGGCCGTAGTCGTCGGCGACTTG
CTGCATGAGGCTGTTGACCTCGGTCTCGGGCGTGGAGAGAGAGGTGGAGCCGGCCATGGCGCCCTCCATGAACTCGGCCTGGACTTCCATGTTGACGAAC
TGGCGCTCGAAGTTGTCCATGGTCTCGGACATCTTCTGCAGGTTCCCCGTGGCGAGCGCGGAGTCGAGCGACTTGACGATGTTGGCCATGGACTTGCCGA
TGACCTGCATCTTCGCCTGGGTGTCGAGGCGGGAGGCGAGGCGGAGGTAGTTCATGTGCTCGGTGCGCTTGCGGATGGCGTTCTCGGCGTAGATCCGCGC
GCCGTCCATGTTCCCCTTCTCGATCGCCTTCTTCACCTTGAGCTTCTGCTCCTTCTCCTCCTTCTCGCACTTGCGCGCCTGCCGCTGCAGCGACTTGGAG
GTGAACTTGAGGTCGAAGATCTGGGTCATCAGCTTCTCCGGGTTCCCCATCGCCGCCGCCGACGAGCTAGCCCCGATCGTGGATTTGGCTAGGGTTTGAC
GAGGAGGAAGAGGAAAGGCAGATCGGATTGGGGGATTTGGGAACGCG