Detailed information on CNT30554094


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002724, E-value = 2e-97

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30110125Oryza glaberrimaOryza longistaminata72.8173.8692.86308forward
CNT30100179Oryza glaberrimaOryza rufipogon73.2977.8994.52310forward
CNT30575679Oryza glaberrimaOryza barthii39.4829.7793.41167forward
CNT30116236Oryza glaberrimaOryza nivara39.4819.4693.41167forward
CNT30603650Oryza glaberrimaOryza punctata42.7940.1389.5181forward

Expression of CNT30554094

Peptides detected in this lncRNA

>peptide 1 (54 aa)
GKNHLLSRGAEKFLERSGGATKTRTRWRERRDPEAHSSLLRPPPSLRDGNTAAG*

>peptide 2 (46 aa)
MVALVLSKHLHSICSLALSWLVLFILKKQLNCNHFDYFVTLSCMHL*

>peptide 3 (72 aa)
GKKSPTLQRSGKIPREERRRNEDPDAMAGAARSGGAQLSPPAATFSPRWEHCSWVTEAHGGISAKQTLAFNL*

>peptide 4 (55 aa)
EKITYSPEERKNSSRGAAAQRRPGRDGGSGAIRRRTALSSGRHLLSEMGTLQLGD*

Sequence

>CNT30554094
GGGAAAAAATCACCTACTCTCCAGAGGAGCGGAAAAATTCCTCGAGAGGAGCGGCGGCGCAACGAAGACCCGGACGCGATGGCGGGAGCGGCGCGATCCG
GAGGCGCACAGCTCTCTCCTCCGGCCGCCACCTTCTCTCCGAGATGGGAACACTGCAGCTGGGTGACTGAAGCTCATGGTGGCATTAGTGCTAAGCAAAC
ACTTGCATTCAATTTGTAGTTTAGCTCTTAGCTGGCTAGTTCTATTTATTCTAAAAAAACAACTGAATTGTAACCATTTTGATTACTTTGTGACCCTTTC
ATGTATGCATTTGTGAACGTACAGCATACATGTGTGTTTTCCCTGTGCTAAACAATGTTTTTTTTTACTGTGTCCTATGGATTTGATCTGGGAGAATGCA
TATTGGTTCATTGCTTACTTGGG