« Back to Oryza glaberrima search


Detailed information on CNT30554083


BLAST search results

BLAST vs Swiss-Prot:
sp|P0C2F6|RNHX1_ARATH, E-value = 3e-08

BLAST vs NONCODE:
NONORUT004820, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690982Oryza glaberrimaOryza sativa23.7249.3493.46260reverse complement
CNT30109111Oryza glaberrimaOryza longistaminata27.3769.9383.33300forward
CNT30104394Oryza glaberrimaOryza rufipogon27.7476.1986.18304reverse complement
CNT30577507Oryza glaberrimaOryza barthii68.4356.9580.53750forward
CNT30116594Oryza glaberrimaOryza nivara26.1910093.73287forward

Expression of CNT30554083

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MVSFFIQKQHLKLPFQFRLAKLSLVSTTPLSKYHIKILILSGILSFQIILFLSI*

>peptide 2 (46 aa)
MVRKYLHNRRLQFTACNLHKLSIIFTLLQLCPKPEPICCLEYYLHI*

Sequence

>CNT30554083
ATTTTTTTAGATAATGGAATAAATATCCCGGCCTTTGCTCATTAGAGCTACAGCTAATTATTACAAGGAATCACACAAACAACGAGTGAAGTTCAAATAA
AATTAAACACACCCAACGATAAAAAAACCAAACCAAGAAAAGGAGCATACATTTATTCAAGTCTATTTGTGAATCTCCATCCATGGTTCGCAAATATTTG
CATAACCGTCGTCTCCAGTTTACGGCATGCAACCTTCATAAACTCTCCATCATCTTCACACTTTTGCAGCTTTGCCCAAAACCGGAGCCAATATGTTGCC
TTGAATATTACCTGCATATATGAGATAGATGGTGATTTGTCAAAAACTATATCATTCCTACTCAACCACAGAGCCCAACAAATGGCAGATGCTCCAACAA
GTATGAGTTTACTCATCTTCTTGTGAACCCCTAAAAGCCAACCATCAAACATATTAGATATGGTACTAGGGAGGTTTAAACCAAAAGAAAACTGTACTAC
TCTCCAAACAAATTTTGCAAAATGACAGTCAAGAAAAAGATGTTGAATGGTCTCATTTTTCATACAGAAACAACATCTTAAACTGCCATTCCAATTCCGT
CTTGCCAAATTGTCCTTAGTTAGCACCACCCCTTTAAGCAAGTACCACATAAAGATCTTAATCTTAAGTGGCATCTTAAGCTTCCAAATAATCTTATTTC
TCTCAATATAACCATTATTAATTAGAGCAAGATACATTGACTTAACAGAAAATCTACCATTCTAATGATAATTCCATCTAAAACAATCAGAGGATTGGTT
CAACTGAATATGTATAATTGAAACACACAAATCATGCCAATATATAAGATTCTGACCAACTAAGGATCTCCTGAAGAAAACATTAAGTGGAACAGAACTC
ATAACATTAGCAATAGTAGAACTTTTCCTTCGGACAATAGAGTATAAAGATGGATATTTATCTTTAAACGCCAAGTTTCCTAGCCATTTATCTTCCTAGA
ACCTTGTTTGATTCCCATCATTCACAATCCAAGAACCCATATATAAGACAATATCTTTGACATTCATTAGACCTGACCAAAATTGAGAATCACCCT