Detailed information on CNT30553888


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30596238Oryza glaberrimaOryza meridionalis90.0732.8295.59408forward

Expression of CNT30553888

Peptides detected in this lncRNA

>peptide 1 (96 aa)
PLYDEFWTLGKQFITWIQSCGEVHRLLDLAVRWRRGRPEVGLSCAESSSDSACEQWLWFDEGDEDHGMGCKRQLAGERCERPAASCCDDSDSYCYG*

>peptide 2 (31 aa)
MYSMNVDPGADPTPTRPMDTPGTPRSFFHHE*

>peptide 3 (41 aa)
MIVLCCSCSASNVFYERGSRGGSNTHKTHGYPRNTPFVFSP*

Sequence

>CNT30553888
GCCCCTCTATGATGAATTCTGGACCTTGGGAAAGCAATTTATCACATGGATCCAGAGCTGTGGTGAGGTCCATCGGCTCCTAGATCTAGCGGTGCGGTGG
AGAAGGGGGAGACCTGAAGTTGGCCTCAGTTGCGCAGAATCCAGCAGCGACAGTGCATGTGAGCAGTGGCTGTGGTTCGACGAAGGTGACGAAGACCATG
GCATGGGCTGCAAACGACAACTAGCAGGGGAGCGGTGCGAACGCCCTGCTGCTTCCTGTTGTGACGACAGTGACTCCTACTGCTATGGATGATTGTATTG
TGTTGTTCATGTTCTGCTTCCAATGTATTCTATGAACGTGGATCCAGGGGCGGATCCAACACCCACAAGACCCATGGATACCCCCGGAACACCCCGTTCG
TTTTTTCACCATGAATGATAAATTAAAGGTCCCTAAATGGCTGGAGATTAAAG