Detailed information on CNT30553839


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693936Oryza glaberrimaOryza sativa19.3121.6399.06106forward
CNT30521132Oryza glaberrimaSetaria italica21.6817.4289.92119forward
CNT30596215Oryza glaberrimaOryza meridionalis32.7935.6498.33180forward
CNT30370219Oryza glaberrimaOryza glumipatula77.7844.4398.36427forward
CNT30101862Oryza glaberrimaOryza rufipogon81.4246.2795.97447forward
CNT30116861Oryza glaberrimaOryza nivara79.2379.23100435forward

Expression of CNT30553839

Peptides detected in this lncRNA

>peptide 1 (30 aa)
WSQYGSCPKLNPRTGSLQEIKKIQRKQERN*

>peptide 2 (32 aa)
MRRRRTSRGRQRRRSGNGGGGARSTSSEYGER*

>peptide 3 (58 aa)
HGHSTVLVQNLIQEPDLFKRSKKSKENKKETSRRMKKKSRSNQLEAGDGVLGRRAMSS*

Sequence

>CNT30553839
CATGGTCACAGTACGGTTCTTGTCCAAAACTTAATCCAAGAACCGGATCTCTTCAAGAGATCAAAAAAATCCAAAGAAAACAAGAAAGAAACTAGTAGGA
GGATGAAAAAGAAATCAAGATCTAATCAATTAGAGGCTGGAGATGGTGTTCTTGGGAGGAGGGCGATGAGTTCATGAGAAGACGTAGAACCAGTAGAGGA
AGGCAACGGAGAAGGAGTGGGAACGGCGGCGGCGGAGCACGTTCAACTTCATCGGAGTACGGCGAACGTTAGAGGAAAGGATAGGTAAACATTCCCCAGA
TCGGATCTACGCCACCAACCTCAACCTCGAGCAAGAACAAGAACAGCAACGAGAGGGAGTGGAAACTAAAATTCGACCAACCCGAGGGGCTTCCTCGCAA
GAATGCAAGGAGTAGACTCGAAAGGAAAAGAAACTAGGAGGACCTGAATGTAATAAAAAGATGGGAACCAAGGACTTATCTGCGAAACAGAGGGGACTCC
GGGGGCTCTAATGCATAAGGGGCGCAATTAGACGGATGGGGAAGGTTTA