Detailed information on CNT30553785


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693746Oryza glaberrimaOryza sativa68.0437.8899.19247forward
CNT30520681Oryza glaberrimaSetaria italica21.2120.6485.7177forward
CNT30306352Oryza glaberrimaTriticum aestivum26.1717.4688.4295forward
CNT30398756Oryza glaberrimaTriticum turgidum23.424.5688.2485reverse complement
CNT3067432Oryza glaberrimaLeersia perrieri73.5537.3988.01267forward
CNT30596221Oryza glaberrimaOryza meridionalis100.2871.3798.35364forward
CNT30109966Oryza glaberrimaOryza longistaminata99.7268.5698.62362forward
CNT30101607Oryza glaberrimaOryza rufipogon100.2845.4499.18364forward
CNT30576506Oryza glaberrimaOryza barthii10072.699.72363forward
CNT30496153Oryza glaberrimaDigitaria exilis21.4916.9289.7478forward

Expression of CNT30553785

Peptides detected in this lncRNA

>peptide 1 (92 aa)
PSHQTEDKLKMSTSCISSFCNKTIFMRILVVIALLLLTLGVLPFAPHSHSETSNTSRKSRYILISGCNNYCSVACCYCNIHRFPPVCEKCCK*

Sequence

>CNT30553785
GTCCAAGTCACCAAACTGAAGATAAGCTGAAGATGTCGACTAGCTGTATTAGCAGCTTTTGTAACAAGACCATCTTCATGAGGATACTTGTCGTTATAGC
TTTGCTTCTACTGACCCTTGGAGTTCTTCCCTTTGCACCACATTCACACAGTGAAACTTCGAACACCAGTCGAAAATCTCGGTACATTCTTATAAGTGGT
TGCAACAACTACTGCAGTGTGGCATGCTGCTATTGCAACATTCACAGGTTCCCTCCAGTTTGTGAGAAGTGCTGCAAATAATTCATTAAGTCCATGACAC
ATATCTTGTTTAAGGAACAATGCACAGGCATTCTTTTTCTGTGCAATCCCACCTTCGTTTTCT