Detailed information on CNT30553766


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30370330Oryza glaberrimaOryza glumipatula75.5299.6799.921191forward
CNT30576582Oryza glaberrimaOryza barthii71.2110099.911123forward
CNT30116660Oryza glaberrimaOryza nivara75.4689.2799.581190forward

Expression of CNT30553766

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MRPPLRTPRCSTPCPCQHWQRKIKEQISW*

>peptide 2 (35 aa)
MVPFPFNSFFIFQDGEETAQPANQHPPKATNTALG*

>peptide 3 (33 aa)
MNDLRSFTFFTVSCATGDFVAVNSMMVADGEMR*

>peptide 4 (48 aa)
MSCLLIIWHMFFGKVKHGNMPCSNAALVSIYLFTLKFHASSCDKNTCNQ

>peptide 5 (81 aa)
MKVAARRRRLLGKGLPWCHSLLIHFSSSKMVRRQLSQPISTHPRPLTLPWDEISGMTSCCCSDVKYWVLTNRSGFSFFLSV*

>peptide 6 (71 aa)
MVTERRRGGVQMSISTKAMIAATRSPMRLNAASSSDSSVQHTLPMSALAEKDQRTNLLVIGGMLKQDESGS*

Sequence

>CNT30553766
AGATAATCAAGTAGTTAAAAATTGTTAGTTCAGAGTTCAGACTGACAGTAGACTTTTGAGATCTGCCCGGAAGTTTAGGATCTAAGTGAAACCATTTAAT
ATTCCTACTTGTTTCAGTGCTTTTCTATTGGAAGTTACACTAGGCCACAAAAAATGTGCATCCTTTATGGGGATCACTAAAGAAACACTTAATGACTTAA
CAGCAAGGGAAGAACAATAAATCTGTCTTTTTTGCTAATTACATTTTATCTGAGGATAAACCAGTTCCTGTGCTTCTGTGTCGTGATCACGTCAAAATCG
AGAGAGAGAGAGAGAGAGAGAGAGAGTAGGAGGTTAGCAAGTCATATCATACATTTAACAGATTTGACAAGCATCTATATATTTCCAAAGCTATCAATTC
AGGCTAAAGATGAAGAGACTATTATACCAATAAACATGACTTACAATAGGATGCATTACAATTAAGCAATTATTTAACTTGAAAAATCAGGAGCCAATGC
CTTGCCTTCCTGCTTTCTCCAACAACCTTCACCCTGCACATCTTTGATTCTTCAGAGAAGCAATCAAGCTTCTCCCATCAGAGGACTCACAGTCCTGCAG
GTACTCCTCCACCTCAGCAGCAAGGGTAGATGGTGACTGAGCGCCGCCGTGGCGGTGTGCAGATGAGCATCAGCACCAAGGCGATGATCGCAGCGACGAG
AAGCCCCATGAGGTTGAATGCGGCCTCCTCTTCGGACTCCTCGGTGCAGCACACCTTGCCCATGTCAGCACTGGCAGAGAAAGATCAAAGAACAAATCTC
TTGGTGATTGGTGGTATGTTGAAGCAAGATGAAAGTGGCAGCTAGAAGAAGAAGGCTTCTTGGCAAAGGTCTCCCATGGTGCCATTCCCTTTTAATTCAT
TTTTCATCTTCCAAGATGGTGAGGAGACAGCTCAGCCAGCCAATCAGCACCCACCCAAGGCCACTAACACTGCCCTGGGATGAAATTTCTGGGATGACCA
GTTGCTGCTGCTCAGATGTAAAGTATTGGGTTTTGACCAACAGATCTGGTTTTTCATTCTTTCTTTCAGTATGAATGATCTGAGATCCTTCACCTTCTTC
ACTGTCAGTTGTGCTACTGGCGATTTTGTCGCAGTCAATTCGATGATGGTTGCTGATGGTGAGATGAGATGAAAACTACACTGGATGCACTGATGATACT
CCTGGTGAACTTGCAAAAGTTCAGAGATCTTACTTTCTGAAGGCTGTTGAAAAGTAATTCACTTCTTCAGTGATTGAAGTCCTGGAAACAAAACAAGGTT
GATTAGCATTTGCTGATGGCTACATTTCGTTCCCTGTGAAACACATCTCATTCAGGTTCAGCATTTGAGTTTAGGTAGTAGCATACATTGGGTGACACAT
GTTGTGTGTCGGTGTGACTTAGACCTGCAATGAGTTGCCTTTTAATAATCTGGCACATGTTTTTCGGGAAGGTGAAGCATGGCAACATGCCTTGTTCCAA
TGCAGCTCTTGTATCTATCTATTTATTTACTCTGAAATTCCATGCATCTTCTTGTGACAAGAATACATGCAATCAAG