Detailed information on CNT30553759


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30116727Oryza glaberrimaOryza nivara75.965.7999.39652forward

Expression of CNT30553759

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MKRGADTLRWLLLRLSLQPASCSTLVPPPPHSHGQCWPLILPTCHCC*

>peptide 2 (61 aa)
MRISTVRVEGTPAEETGTATATAILVEVVVYEGAVQHHILTVPAVPHTSLLPLLLSCDAKT*

>peptide 3 (46 aa)
MYQTMVWPCRSHECQLFHWVVSESCKFFPPLGIFYLIFFLLPARGI*

>peptide 4 (47 aa)
MATSPSESATCLLLHFGTTTTTFPWPVLASHPPYLPLLLECSERNQQ*

>peptide 5 (64 aa)
PPPPPPWLLRAVGCNLQLVDAGFDSDRLTLSSPRRTRSASASLARHGEWGGRNCTRACRCLGVE*

>peptide 6 (42 aa)
MENGEGGIVLVPVGASGWSRINQSWGVLLVSLSATRPSDFSS*

>peptide 7 (69 aa)
MGREELYSCLSVPRGGVGLIRVGGCSSYRCRLLGPLTLAVEGAAGGEVVETSSAVNAPLHHAQRCASLP*

Sequence

>CNT30553759
CCGCCGCCGCCGCCGCCTTGGCTCCTCCGCGCGGTAGGCTGCAACCTGCAGCTCGTCGACGCCGGCTTTGATTCCGATCGTCTCACCCTCTCCTCTCCTC
GCCGCACCAGATCCGCATCGGCATCGTTGGCTAGGCATGGAGAATGGGGAGGGAGGAATTGTACTCGTGCCTGTCGGTGCCTCGGGGTGGAGTAGGATTA
ATCAGAGTTGGGGGGTGCTCCTCGTATCGTTGTCGGCTACTCGGCCCTCTGACTTTAGCAGTTGAAGGTGCTGCCGGCGGCGAGGTGGTCGAAACCTCCT
CGGCGGTCAATGCACCCCTCCACCACGCCCAGAGATGCGCATCTCTACCGTGAGGGTGGAGGGCACGCCAGCTGAGGAGACAGGGACGGCGACCGCAACG
GCCATCCTGGTGGAGGTGGTAGTGTACGAAGGAGCCGTGCAGCACCATATCCTCACTGTCCCTGCAGTTCCCCACACGAGCCTGTTGCCTCTATTGCTGT
CCTGCGACGCCAAGACATGAAAAGAGGCGCCGACACCCTGCGATGGCTACTTCTCCGTCTGAGTCTGCAACCTGCCTCTTGCTCCACTTTGGTACCACCA
CCACCACATTCCCATGGCCAGTGCTGGCCTCTCATCCTCCCTACCTGCCACTGCTGCTAGAGTGCTCGGAGCGCAATCAACAATAGAACCGTGTTGAATG
TACCAGACAATGGTATGGCCATGCAGGTCCCATGAATGTCAATTATTCCATTGGGTTGTATCTGAGTCCTGCAAGTTTTTTCCTCCACTTGGCATTTTTT
ACTTGATATTCTTTTTGCTACCAGCTAGAGGGATCTGATGTACACCAGTTCCATCAGAT