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Detailed information on CNT30553753


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000270, E-value = 5e-93

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690398Oryza glaberrimaOryza sativa58.7561.1295.13349forward
CNT30369411Oryza glaberrimaOryza glumipatula58.9257.1995.14350forward
CNT30106620Oryza glaberrimaOryza longistaminata57.9155.2289.83344forward
CNT30576547Oryza glaberrimaOryza barthii60.4465.39100359forward

Expression of CNT30553753

Peptides detected in this lncRNA

>peptide 1 (39 aa)
EEIDNPAAATNPSRHHPNRCCAVAAGLAIAVQRHSCSTP*

>peptide 2 (37 aa)
MLEELSRIIEGLKVPNDIDRHWDGSSTLELQIIIAHY*

Sequence

>CNT30553753
GGAAGAGATCGATAACCCTGCAGCCGCTACAAACCCTAGCCGCCATCACCCCAATCGCTGCTGCGCCGTCGCCGCAGGTTTAGCCATCGCCGTCCAGCGC
CACTCCTGCTCGACTCCTTGAGAGCAGGAGTTTCAGGAAGCGGGGAAAGCAGGAGGAGAAAAGAAGGAAAAAGGGAAGAGAGGCAAAAGTTGGGGATTTT
CTGGGTTTTCATAAATTGATCTCAAATTCGATTTCTCCTCTGTAAGGGTGTGGAGGGTTCCAATGTTGGAGGAGTTGAGTCGGATTATTGAAGGACTTAA
GGTACCTAATGATATTGATCGGCATTGGGACGGGAGTAGCACCCTTGAACTACAAATTATTATTGCACACTATTAAAATTTAGTTTTAGATTATGTTTCT
ACTTAGATAAGTTTTGCGTAGAACTTATGAAGGTCATTTAAAGTTCTGGTCCTTATTTTCACGTGGAATTTGTAGAGCTAGGATGGGTTGGATTGTGTGG
TTTATATCGTTATTGAGTTATTTTATAACTGCCTATCGTGGATGTCTGTATTTTTAGGTTACTCTGCCGAAATTTCTAATAATTTTGGGAGTTA