CANTATAdb - search

Detailed information on CNT30553729

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LRR4|R13L1_ARATH, E-value = 3e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30521356	Oryza glaberrima	Setaria italica	64.4	66.22	84.67	398	forward
CNT30576379	Oryza glaberrima	Oryza barthii	53.56	100	100	331	forward

Expression of CNT30553729

Peptides detected in this lncRNA

>peptide 1 (35 aa)
ASHILLCDVGRRICLIVHQNSCSQVPQLFSFLETE*

>peptide 2 (44 aa)
MLVVTDENPLATDSMVSLVSFISSKFSETHSHTRNWKYSFTLGSL

Sequence

>CNT30553729
GCATCACATATCCTCCTTTGTGATGTTGGAAGAAGGATCTGCTTAATAGTTCATCAAAATAGCTGCTCCCAAGTTCCTCAATTGTTCTCCTTCCTGGAGA
CTGAATGAACCCAAGGGCCATCCATATTTGCACCAAGGTTTCTTTTTCGAACACATAATCTTTATGGAAGACTGAGCAAAACGCAAAACATCGCTTCAAT
ATGGCAGGCAAATGATTGTAACTCAGCCTCAGTGCTGGTAATATATTGTTCTTATCTGATGCAAGTGGGAGGCCTTTCAACTTCTTCACAATTTCCTTGC
CTATAATTTCTAAATGTGGGTGCAAACTGGAGTCACCATCAGCAAATGCATAGCTCCTGAACAAGTTCCAGCAATCATTTTCAGATAACTGCTTTAGAAA
GGTCCTCATTCCAAACATCATCAAGTACTAGAAGAAATCTTTTACCTTCCAGCTTTTTTGAGAGATCTTCTTGAAGCAAGTTCATGTTGGTCGTGACCGA
TGAGAACCCACTGGCAACTGATTCAATGGTTTCCTTGGTAAGCTTCATTTCGTCAAAATTTTCAGAAACGCACAGCCACACCCGTAACTGGAAGTACTCC
TTTACTCTTGGATCATTG