Detailed information on CNT30553708


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673529Oryza glaberrimaSetaria viridis23.1627.0784.7185forward
CNT3010905Oryza glaberrimaZea mays41.4251.0184.87152forward
CNT30370323Oryza glaberrimaOryza glumipatula70.0357.2499.61257forward
CNT30149118Oryza glaberrimaBrachypodium distachyon29.1633.2385.98107forward
CNT30576411Oryza glaberrimaOryza barthii78.255.3100287forward
CNT30604156Oryza glaberrimaOryza punctata70.574696.53259forward

Expression of CNT30553708

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MTPGSSFPSNSSKVELNDATESGPISRPIQPSGIADAGT

>peptide 2 (34 aa)
GKQRKVLIIMFPEVRYIQQTQNAGKLFKRFPASL*

Sequence

>CNT30553708
GGGGAAACAACGTAAGGTATTGATAATTATGTTTCCTGAGGTAAGGTATATCCAACAAACACAAAATGCTGGGAAGTTATTCAAACGATTTCCAGCATCT
CTATAAAACATTGGTCTCTTACATTTCGAGTGGTTGAAGAGGTGCGAGAAAGGAGTAGAATATAGCAAGTTTAGAATGGTACATGAAGAAGATGCAACAA
AATGAAACTTAGCCTCATACGGCCACAGTGACAGCTTCATCAAGTGCAATGACTCCAGGAAGTTCCTTTCCTTCCAACAGCTCCAAGGTAGAGCTGAATG
ACGCGACTGAATCTGGACCAATATCCAGACCCATCCAACCATCAGGAATAGCAGATGCTGGAACAAC