Detailed information on CNT30553666


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3BAI2|YCX91_PHAAO, E-value = 7e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30406993Oryza glaberrimaBeta vulgaris9.1524.2995.7494reverse complement
CNT30284769Oryza glaberrimaTriticum aestivum13.5366.1997.12139forward

Expression of CNT30553666

Peptides detected in this lncRNA

>peptide 1 (33 aa)
KIQKKKKKKKRKRTQRGPLCTVRCGSEQGPRRD*

>peptide 2 (31 aa)
MGESLTEQCRVEVEGPRVVNFFSRRRNNDGI*

>peptide 3 (59 aa)
KYKKKKKKRNGNEHNVALFARSDADRSKAQEEISRGRIKKKKREREISRGRRNSPSRRH*

>peptide 4 (51 aa)
MTYCSHSMMCVETMWKWHLHHAMASPSCMMLLRQLTTSSMQLHGQSHGAVN*

>peptide 5 (44 aa)
MVRAIGKGPAERTVKITSAEPAWQAAGAAGKCLLVGNFPQWAKA*

>peptide 6 (37 aa)
NTKKKKKKETETNTTWPSLHGPMRIGARPKKRLVEDE*

>peptide 7 (83 aa)
MRDSKRTRSAPPREPLEMTEDMTPRSKTRKFVPFGEGAVLPEEMLTEVFLRLPIKSILRFRAACHSSKFQLHRGVHVLAIEAH*

Sequence

>CNT30553666
AAAATACAAAAAAAAAAAAAAAAAAAGAAACGGAAACGAACACAACGTGGCCCTCTTTGCACGGTCCGATGCGGATCGGAGCAAGGCCCAAGAAGAGATT
AGTCGAGGACGAATAAAAAAAAAGAAGAGAGAGAGAGAGATAAGTCGAGGACGGAGAAATTCCCCAAGCCGCCGCCACTAACCCTAGCTTCCGCCAGCAC
GGGTGCAGATCAAGTTCCAAATCAACCTGATTGGTCCTCAACTTTGAGGGTAACTTGATGCGAGACAGCAAGAGGACGAGGTCCGCACCACCCAGAGAAC
CACTGGAAATGACAGAGGACATGACCCCAAGAAGCAAGACGAGGAAATTTGTACCATTCGGAGAAGGTGCGGTGCTACCTGAGGAGATGCTGACGGAGGT
GTTCCTACGACTGCCCATTAAATCCATCCTTCGTTTCCGGGCTGCCTGCCACTCCAGCAAATTTCAACTCCACCGCGGTGTACACGTGCTCGCCATCGAA
GCCCATTGATGACCTACTGTTCACACTCGATGATGTGCGTGGAAACTATGTGGAAGTGGCACCTTCACCATGCCATGGCCTCACCCTCCTGTATGATGCT
GTTGCGCCAGCTTACTACGTCTTCAATGCAACTACACGGGCAATCACACGGTGCGGTGAACTGATGACAGGGAAGCCGGCGACCGAAGCCCCGGTGAACG
GCGGCCGTAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTCGAGTAAGTTCCGACCTGCACGAAAGGCGTAACGATCTGGGCACTGTCTCAGAGTAG
CTTATGGTTAGAGCAATAGGAAAGGGCCCAGCAGAGAGAACAGTCAAGATAACGAGCGCGGAGCCCGCTTGGCAGGCGGCAGGAGCTGCGGGCAAGTGCT
TGCTTGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTGGAAGGCCCACGGGTCGTCAACTTCTTTTCTCGGAGAAGA
AACAATGACGGTATCTGAGGAATAAGC