Detailed information on CNT30553663


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30604109Oryza glaberrimaOryza punctata98.9299.7393.81096forward

Expression of CNT30553663

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MRPPLRTPRCSTPCPCQHWQRKIKEQISW*

>peptide 2 (71 aa)
MVTERRRGGVQMSISTKAMIAATRSPMRLNAASSSDSSVQHTLPMSALAEKDQRTNLLVIGGMLKQDESGS*

>peptide 3 (40 aa)
MSCLLIIWHMFFGKVKHGNMPCSNAALVSIYLFTLKFHASS

>peptide 4 (35 aa)
MVPFPFNSFFIFQDGEETAQPANQHPPKATNTALG*

>peptide 5 (34 aa)
DLTSIYIFPKLSIQAKDEETIIPINMTYNRMHYN*

>peptide 6 (85 aa)
MKVAARRRRLLGKGLPWCHSLLIHFSSSKMVRRQLSQPISTHPRPLTLPWDEISGMTSCCCSDVNCATGDFVAVNSMMVADGEMR*

Sequence

>CNT30553663
GATTTGACAAGCATCTATATATTTCCAAAGCTATCAATTCAGGCTAAAGATGAAGAGACTATTATACCAATAAACATGACTTACAATAGGATGCATTACA
ATTAAGCAATTATTTAACTTGAAAAATCAGGAGCCAATGCCTTGCCTTCCTGCTTTCTCCAACAACCTTCACCCTGCACATCTTTGATTCTTCAGAGAAG
CAATCAAGCTTCTCCCATCAGAGGACTCACAGTCCTGCAGGTACTCCTCCACCTCAGCAGCAAGGGTAGATGGTGACTGAGCGCCGCCGTGGCGGTGTGC
AGATGAGCATCAGCACCAAGGCGATGATCGCAGCGACGAGAAGCCCCATGAGGTTGAATGCGGCCTCCTCTTCGGACTCCTCGGTGCAGCACACCTTGCC
CATGTCAGCACTGGCAGAGAAAGATCAAAGAACAAATCTCTTGGTGATTGGTGGTATGTTGAAGCAAGATGAAAGTGGCAGCTAGAAGAAGAAGGCTTCT
TGGCAAAGGTCTCCCATGGTGCCATTCCCTTTTAATTCATTTTTCATCTTCCAAGATGGTGAGGAGACAGCTCAGCCAGCCAATCAGCACCCACCCAAGG
CCACTAACACTGCCCTGGGATGAAATTTCTGGGATGACCAGTTGCTGCTGCTCAGATGTAAATTGTGCTACTGGCGATTTTGTCGCAGTCAATTCGATGA
TGGTTGCTGATGGTGAGATGAGATGAAAACTACACTGGATGCACTGATGATACTCCTGGTGAACTTGCAAAAGTTCAGAGATCTTACTTTCTGAAGGCTG
TTGAAAAGTAATTCACTTCTTCAGTGATTGAAGTCCTGGAAACAAAACAAGGTTGATTAGCATTTGCTGATGGCTACATTTCGTTCCCTGTGAAACACAT
CTCATTCAGGTTCAGCATTTGAGTTTAGGTAGTAGCATACATTGGGTGACACATGTTGTGTGTCGGTGTGACTTAGACCTGCAATGAGTTGCCTTTTAAT
AATCTGGCACATGTTTTTCGGGAAGGTGAAGCATGGCAACATGCCTTGTTCCAATGCAGCTCTTGTATCTATCTATTTATTTACTCTGAAATTCCATGCA
TCTTCTTG