Detailed information on CNT30553525


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672423Oryza glaberrimaSetaria viridis19.4927.9993.48138forward
CNT30179357Oryza glaberrimaSecale cereale38.4228.0490.07272forward
CNT30386304Oryza glaberrimaTriticum turgidum23.1630.4895.12164forward
CNT3017553Oryza glaberrimaZea mays16.5345.3594.02117forward
CNT30349409Oryza glaberrimaEragrostis tef28.6716.9793.6203forward
CNT30596052Oryza glaberrimaOryza meridionalis38.750.2898.54274forward
CNT30101149Oryza glaberrimaOryza rufipogon38.2849.7299.63271forward
CNT30498207Oryza glaberrimaDigitaria exilis2534.3789.27177forward
CNT30604057Oryza glaberrimaOryza punctata16.3829.1598.28116forward

Expression of CNT30553525

Peptides detected in this lncRNA

>peptide 1 (48 aa)
RTGLSEANSFLFIIHSMYHDMPPATENIHCREARAQRWTKNLKRRGEN*

>peptide 2 (83 aa)
MELILVKVSTLKVAPHMTPSLSTRGIAFSRFIGCSKLLSPPSLWNMHPTGNGAYDLPHPPFTISLSSQITTDPSAAIPHWSAG*

>peptide 3 (49 aa)
MLRTEKHIGYREEEEEEEMSGGGKRRGGRRQRRPRWRPSWWRCRRGAWS*

Sequence

>CNT30553525
CCGAACTGGATTGAGTGAAGCAAACTCTTTCTTATTCATCATTCATAGTATGTACCATGACATGCCACCCGCGACCGAGAATATACATTGCCGAGAGGCG
AGAGCCCAAAGATGGACTAAAAATTTAAAAAGAAGAGGTGAAAATTAAGTAAAAACACAGCAGAAAAATAGATTGGCGCGCTTCCACGCTAGCTGCAAAT
ATCGCTCTAATAATCTGCATGCTTCGGACGGAGAAGCACATCGGATATAGAGAGGAAGAAGAAGAGGAAGAGATGAGCGGCGGCGGCAAACGGCGAGGAG
GCCGGCGGCAGCGTCGTCCCAGGTGGCGGCCCAGTTGGTGGCGCTGCCGACGCGGGGCATGGAGTTGATCTTGGTGAAGGTGTCGACCTTGAAGGTGGCG
CCGCACATGACGCCCTCGCTGTCCACCCGCGGCATCGCCTTCAGCCGGTTCATCGGGTGCTCGAAGCTCTTGAGCCCCCCCTCGCTGTGGAACATGCACC
CCACCGGGAACGGCGCGTACGACTTGCCGCACCCTCCCTTCACGATCTCCCTCTCGTCGCAGATCACCACCGACCCATCCGCCGCGATCCCCCACTGGTC
GGCGGGGTAGGGGCCGCGGTCGCGGAGGGTGCGGTAGGCCTCGATGACGAGCAGCGCCTCGTTGGTGGAGCGGCTGCACAGCCCGTACTGCCGGATCAGG
CTGCTCAG