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Detailed information on CNT30553457


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696895Oryza glaberrimaOryza sativa18.7131.9296.88128forward
CNT30596177Oryza glaberrimaOryza meridionalis22.2224.3693.42152forward
CNT30102895Oryza glaberrimaOryza rufipogon23.3931.5693.12160forward
CNT30115552Oryza glaberrimaOryza nivara23.5434.7792.55161forward
CNT30551842Oryza glaberrimaOryza brachyantha36.2610.9487.1248forward

Expression of CNT30553457

Peptides detected in this lncRNA

>peptide 1 (32 aa)
LGRGDDDLPVATNTCSSDSKILLMELFHFCNA*

Sequence

>CNT30553457
GCTCGGGCGCGGCGACGACGACCTCCCCGTCGCGACGAATACCTGCTCCTCTGATTCAAAGATTCTCCTGATGGAGCTGTTCCATTTTTGCAATGCCTAA
TTTTGAGGATTTTGCTATACCTATCCTACAGGTTTTGTGCGATTCTTGAACTTGGACAAGTTGGTAGCTTAGTTCTGCTACACAAATTTTTGTTGCTTGT
TGTGGAACTATTGTTTGATTCTGGAAGCAGAGTATCTGAGACTATCTGTTATTAGGTTGAATCTGAGATGAACTATTGTTTGAATTTTGTTGTATTCTGA
TTGTATCTGTTATTAGTTGAATCTGATATGGTATCTGTTATTAGGTTTGAATCTGAGATGGTATGAGAAATTGGAATGAATTTGGTGGCTCAAATTTAAT
GGGCCCATTTAGATGGCTTGATCTGAAAGTTGGTTGATAAATGGGCCAGTTTTGAAATGGGCCGGTTTTTAAATGGGCCTATTTTAAAATGGGCTAGTTC
TAAAAAAAAATAATTGGCTGCTGTTAAAAAAATAATGGGTCGTTTGAAAATATTTGCTGACGTGGCTATACGTCATCAGTGACATGTCATCACACACGTG
TCAACGACCACGTCACCTGCCACGTGGCAACCATCCGTGACGTTTAATTTCGTCACAAAAGGTTTGGCCTGGGCTAGACTACAC