Detailed information on CNT30553440


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004101, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30101501Oryza glaberrimaOryza rufipogon98.8181.8298.71080forward
CNT30576146Oryza glaberrimaOryza barthii98.978.597.781081forward
CNT30116641Oryza glaberrimaOryza nivara33.9473.7699.46371forward
CNT30604007Oryza glaberrimaOryza punctata90.6774.1884.56991forward

Expression of CNT30553440

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MNILNEFINNEYIILLIGFDNRVYCSLLCNLQFIAIPPHGLKRSANNISPCL*

>peptide 2 (50 aa)
MPASACLLFQFFLPGCESPIPSPIWICMYTRELREIRIACTKFTEITAVS*

>peptide 3 (59 aa)
SLRHRRCLSSCRASTAVNHACVCLPPLPIFPPRMRISYPVPDLDLYVYTRAAGDPDRMH*

>peptide 4 (31 aa)
MVLPFTISNFPVTIFQLSCAHFSPQILYAFF*

>peptide 5 (36 aa)
MKSYAIFSLLSLFHLDHTTKYQHQYFLQFHLFSNVL*

>peptide 6 (44 aa)
MHLGKSFILYLQSWISLVKLHLINVGRMVIHGIIIMTSSTLQFN*

>peptide 7 (45 aa)
MQYFLCYHCFIWIILPSTNINIFFNSIYFPMCYNLQHLLAKHYLS*

>peptide 8 (29 aa)
MMLTLSDCSSTSMVCFTHRETTIFFCISI*

Sequence

>CNT30553440
CCTCCCTCCGCCATCGTCGCTGCCTCTCTTCCTGTAGAGCCAGTACCGCAGTAAACCATGCCTGCGTCTGCCTGCCTCCTCTTCCAATTTTTCCTCCCCG
GATGCGAATCTCCTATCCCGTCCCCGATCTGGATCTGTATGTATACACGCGAGCTGCGGGAGATCCGGATCGCATGCACTAAATTCACTGAAATCACCGC
AGTGAGTTAAGTATATACTCCACCTAATAACGAAATGCACTTGGGTAAATCGTTCATTTTGTATCTTCAGTCCTGGATTTCTCTTGTTAAGCTCCATCTT
ATCAATGTTGGTAGAATGGTGATCCATGGGATAATTATTATGACAAGCTCTACTTTACAGTTCAACTAGACCATCAATTGGTTTCCTGAAAATTTTTTTA
TCTGAGCAATGCCACTGCTTGTTCTGTTCTTTCTCCAACACACTTTTGTGCAAAGTTAATCACCTTAAGAAAAGACCATTAAAAGTGTTAACGATGAAAT
CCTATGCAATATTTTCTTTGTTATCACTGTTTCATTTGGATCATACTACCAAGTACCAACATCAATATTTTCTTCAATTCCATTTATTTTCCAATGTGTT
ATAACCTACAACACCTTCTGGCAAAACACTATCTTTCATAAAGTCTAAGGACGCATGATGCTAACTCTATCAGATTGCTCATCTACTTCTATGGTGTGCT
TCACACACAGAGAGACGACTATTTTTTTTTGTATATCTATATGAATATCTTGAATGAATTCATTAATAATGAATATATCATTCTGTTAATAGGTTTTGAT
AATAGAGTATACTGTAGCTTGCTTTGCAACTTGCAATTCATTGCCATTCCACCACATGGACTTAAAAGATCAGCAAATAATATATCTCCCTGCTTGTAAC
ATATATTATCATAGGGCATGAACTGAAGTAAATATACACTGTTTCGAGCTGCTAGCCTACTACCAAACAGTACAACAAATAGTCATGGTCTTACCATTCA
CTATTAGTAATTTTCCTGTTACCATATTTCAGCTTTCTTGTGCACATTTTAGCCCCCAAATCTTATATGCTTTTTTTTAATGTTTTTATGCTT