Detailed information on CNT30553434


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692309Oryza glaberrimaOryza sativa24.331.3292.6311reverse complement
CNT30107547Oryza glaberrimaOryza longistaminata26.1796.2699.1335forward
CNT30576960Oryza glaberrimaOryza barthii22.0311.6891.84282forward
CNT30117668Oryza glaberrimaOryza nivara13.9887.3296.65179forward
CNT30604708Oryza glaberrimaOryza punctata24.313.7191.96311reverse complement

Expression of CNT30553434

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MQPRERLSRQLGELHAHFLRRGHPFPPAAHPDPDLDRAYISA

>peptide 2 (41 aa)
ATATATARTRACRTGGCSSGFPWSADGSSTHPPSSSHNSKL*

>peptide 3 (54 aa)
RRRRRRPVHGRVGREGAQVASPGAPMGRALIRRHRATTVSFNLYLSVCVVLNAG*

>peptide 4 (52 aa)
MKRKNGLALEQLFMNSKSAIHESPASNTAQFSILYIFHILPLLCVEQLSNTS*

>peptide 5 (33 aa)
MSPLPQTLHNFQSSIYFTYCHSYVLNNYQILVE*

>peptide 6 (40 aa)
MLVDPAIHPVALFPRSASSACIYLRMMLLRSKYSCNSSQQ*

>peptide 7 (38 aa)
DGDGDGPYTGVSDGRVLKWLPLERRWVEHSSAVIEPQQ*

>peptide 8 (57 aa)
MLNKHRKVVLYIAKPQCSLESAFPANSESSTPTSSAAATPSRRRLTPTLTSTAPTSPQ

Sequence

>CNT30553434
GCGACGGCGACGGCGACGGCCCGTACACGGGCGTGTCGGACGGGAGGGTGCTCAAGTGGCTTCCCCTGGAGCGCCGATGGGTCGAGCACTCATCCGCCGT
CATCGAGCCACAACAGTAAGCTTTAATCTCTATCTATCTGTCTGTGTAGTGTTGAATGCTGGTTGATCCTGCGATTCATCCGGTAGCACTGTTCCCTCGA
TCTGCAAGTTCTGCATGCATTTACTTGCGTATGATGCTACTCAGATCTAAGTACAGTTGCAACTCCTCTCAGCAATGATAATTCTTGGCATGTGTACTTA
AGTCTATTATTCCCCTGTCCTACAGAAAGTAAATCAATTTATGCAGCAGAGCTACCGTATCACTGATTGGCAATGGCGTTCGGCACACTACCATTGCATT
GCATGATTCTTCTTCCATAAGAATCCAGAGGCATTAATCCCATTCCCATATTGTTGGATTTTTAGGTCTAAATATGAAGAGAAAGAATGGTCTTGCTCTT
GAACAATTGTTCATGAATTCTAAATCAGCAATTCATGAGTCCCCTGCCTCAAACACTGCACAATTTTCAATCCTCTATATATTTCACATATTGCCACTCT
TATGTGTTGAACAATTATCAAATACTAGTTGAGTAATTTCTATTTGTTGAACAATTGGCAATTAGTAGTTAAATCAATTATATAAATATATGAAATTATA
CCCAATTCATGTTATACAATTTGTAGTTTAGTACTATATAATTACTCCTTCACGTTTCGCATACCCAACCTGAAAATCCTGGGGCCGCCCCTGGGCGAGC
GTCACCCGCGCGGCCAGGCCTGGGCACCTGGCTGTGGCTGGGCCAGCAACCACCAGCCCCAGTGTGGGCAGGCGGCGAGCGGCGGTGCGTCGGTGGTGCC
ACAGGCTTGCGCCTAGCGCCCTCACTGTCTGTCTGTTTCGGTGTCTCGTTGGTTCAGGCTCTCACTGTTTGTCTCAGGTCTGAAATATGAAAAGAAAGAA
GGTCCTGCTATTGATTTGAAGTGTTTATTTTGAAACAGTTGCCGCAAAGAAAAAGACTCAAAATGAAACTCGGGATCAGGCCAATCTGGATCCTTCTTCC
AATGATATGTTGAACAAGCATCGGAAAGTTGTCCTCTACATTGCCAAGCCCCAATGCAGCCTCGAGAGCGCCTTTCCCGCCAACTCGGAGAGCTCCACGC
CCACTTCCTCCGCCGCGGCCACCCCTTCCCGCCGGCGGCTCACCCCGACCCTGACCTCGACCGCGCCTACATCTCCGCAA