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Detailed information on CNT30553409


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692983Oryza glaberrimaOryza sativa72.4893.7996.69453forward
CNT30596132Oryza glaberrimaOryza meridionalis67.3697.2399.29421forward
CNT30108001Oryza glaberrimaOryza longistaminata33.4452.3884.21209forward

Expression of CNT30553409

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MDWSFIYTISVDIDQLALLYVATSISRSH*

>peptide 2 (92 aa)
MVTTIVPSQASKPIVSLNWPPRHLKGHLEALHLSILREHQHWRFNSHLDADGGLEECLVHGIGLANVSDGACRDLECLEVGDGDGREVQISK*

>peptide 3 (45 aa)
MPTGGWRNALYTALAWPTLVTVRVVTWNVLRLGMAMDGRFKSASDP

Sequence

>CNT30553409
CATGCATGTACGTCATTTTTATATTTTTTATTATTTTCAAACATATAAAAAATAAGTTTTCACTATGGCTTTAGCTAGAAAATACAAACTCTGTTATTAA
TCAGAACAAACATATAACATAAGATTGCGTAAAATACTTCTTGAAGCTACATTGCAGAAACATATATAACATCTGCATCTGAAGCATATGGATTGGTCCT
TCATTTATACCATATCAGTCGACATTGATCAACTAGCATTATTATATGTAGCTACTAGCATATCTCGATCACATTAATTAGGAGATCTTTGAGTAGATCT
CTTCAATCACAATGCGAACTGCAATGGGGATCCGAACCCAATGGTTACCACCATCGTGCCAAGCCAAGCTTCCAAACCTATAGTCTCCTTGAATTGGCCT
CCTCGTCACCTTAAAGGTCACCTTGAAGCTCTGCACCTTTCTATCCTTAGAGAACACCAACACTGGCGGTTCAACAGCCATCTCGATGCCGACGGGGGGT
TGGAGGAATGCCTTGTACACGGCATTGGCCTGGCCAACGTTAGTGACGGTGCGTGTCGTGACTTGGAATGTCTTGAGGTTGGGGATGGCGATGGACGGGA
GGTTCAAATCAGCAAGTGATCCTTT