CANTATAdb - search

Detailed information on CNT30553393

BLAST search results

BLAST vs Swiss-Prot:
sp|P43286|PIP21_ARATH, E-value = 1e-14

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30436090	Oryza glaberrima	Aegilops tauschii	37.75	18.06	87.77	188	forward
CNT30681461	Oryza glaberrima	Triticum urartu	37.75	44.44	86.17	188	forward

Expression of CNT30553393

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MLAPPPLALYWCFMMPFTMPTPTMPPRRCRGCRRRRTGTGAWR*

>peptide 2 (87 aa)
AGIALWVGGGEDGVDEDEGADDFGAEGGAGGVAAGHHVGAAAVGVVLVLHDALHDAHAHDAAQAMPRVPTPPHWNRSVAMNSAMSAR*

Sequence

>CNT30553393
CGCGGGCATTGCGCTTTGGGTCGGTGGCGGAGAAGACGGTGTAGACGAGGACGAAGGTGCCGATGATTTCGGCGCCGAGGGCGGTGCCGGTGGAGTAGCC
GCTGGCCACCATGTTGGCGCCGCCGCCGTTGGCGTTGTACTGGTGCTTCATGATGCCCTTCACGATGCCCACGCCCACGATGCCGCCCAGGCGATGCCGA
GGGTGCCGACGCCGCCGCACTGGAACAGGAGCGTGGCGATGAACTCCGCAATGAGCGCCCGGTAGAAGGACCACAGCCGGAGCTCGCCGACGTCGAACAG
CGGCGCCGGCGGCGGGTCGGTGTAGTCCTTGGGCCGCACGTGCTCCGGCTCCTCGCTCACCTCCTTCGACATTGCCGCTCCCTTCAGCAAGCTCAACACG
CTACTCACTCTGAGCTAGCTTAGCTCTGCTCTCTCTTCTCTACCTCTCTCTTCTCTGATGGATGTGGAGAGGAGGGGAGCGTGGGACTGGCCGGTTTT