Detailed information on CNT30553259


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30369884Oryza glaberrimaOryza glumipatula100.4676.6698.06877forward
CNT30551326Oryza glaberrimaOryza brachyantha14.6631.9285.94128forward

Expression of CNT30553259

Peptides detected in this lncRNA

>peptide 1 (87 aa)
RLRPTVALVGVYRVPFRRRRNSPAPPLLPFLFASSINRRQPTSPPCVRTCRSDCCGERDSGRWRWMRAQCLPRAPDLRRQRPLRRPL*

>peptide 2 (36 aa)
ATPANGCACRSISRSLPPTAKLSGAPSPSVPLRLLH*

>peptide 3 (47 aa)
MLVYRLLSVSTLFVIYLLPPSKKKNSTKERSVFWDGGSIVKGKGLFS*

>peptide 4 (29 aa)
MENNSPMCEASENIQRCSCIDYYQLVLCL*

>peptide 5 (29 aa)
MLLQEHQDSQIVVVLEKESPIWRMSEASG*

Sequence

>CNT30553259
CGCGACTCCGGCCAACGGTTGCGCTTGTAGGAGTATATCGCGTTCCCTTCCGCCGACGGCGAAACTCTCCGGCGCCCCCTCTCCTTCCGTTCCTCTTCGC
CTCCTCCATTAATCGGCGTCAACCCACTTCTCCGCCGTGTGTGCGTACGTGCAGGAGCGACTGCTGTGGAGAGCGCGACTCCGGCCGCTGGCGTTGGATG
CGCGCGCAGTGCCTTCCGCGTGCGCCCGATTTGCGTCGGCAGCGCCCACTTCGGAGGCCGCTCTGACGAATTCCGGCGCCGCCTTCACGATCCCCGTCCG
CGTGCGGCCGAGACCTGCGGCGGCGCCAACCTCGGAGGCCGATTCGTTCCATTCCTGTGCAAGTCTCGCGCGCACGACGAGTACTGCGAAGAACAACCCT
TGCCATCACATCCTCAGTATCTGGGGGCGGACGCTCCAGGCAGTGAAGCTGGGACTGGGAGCAGCCGCCGGCGAATGCTTCTCCAAGAGCACCAAGATTC
ACAGATCGTAGTGGTTCTGGAAAAAGAAAGTCCTATATGGCGAATGTCTGAAGCTAGTGGTTGATGGAAAACAACAGTCCTATGTGTGAAGCTAGTGAGA
ATATTCAGAGATGCTCGTGTATAGATTATTATCAGTTAGTACTCTGTTTGTGATCTATTTACTCCCTCCGTCAAAAAAAAAAAACTCAACCAAGGAAAGA
AGTGTTTTTTGGGATGGAGGGAGTATTGTGAAAGGTAAGGGCTTATTTAGTTGATGAAATAAAAATTTTTGGGTGTCACATCAGACGTTTAACCGGATGT
TGGAAGAGGTTTTCGGACATGAATGAAAAAACTAATTTTATAACTCGCCTGGAAACCGCGAGACGAATCTTTT