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Detailed information on CNT30553252


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30248408Oryza glaberrimaAvena sativa21.069.7487.83115forward
CNT30104873Oryza glaberrimaOryza longistaminata81.538.5398.88445forward

Expression of CNT30553252

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MELDAAAGRFLAGRSMPSRSPPMVSLLLWCRLALTKWKGSSVLSFMTATTPL*

>peptide 2 (34 aa)
MERKFSIELYDCHNPPVRNRLVMFYQPSVSGNQG*

Sequence

>CNT30553252
GCAACACCGGCGGCGGCGCGGCGGCTCTCCCTCCCAGGGTAGCGGAGGAGGCGGCTGTGTAGGGGCGGCGAGCTAGGGGAGGGGCCACTTGCTACCTCAC
CATGGAGCTCGACGCCGCCGCTGGGAGATTCCTCGCCGGGAGATCGATGCCGTCGCGCAGCCCGCCGATGGTTTCTCTGTTGCTGTGGTGCAGACTAGCG
CTGACAAAATGGAAAGGAAGTTCAGTATTGAGCTTTATGACTGCCACAACCCCCCTGTGAGGAACCGCCTGGTGATGTTTTATCAGCCCTCTGTTTCTGG
TAATCAGGGGTAGTTCATGATATTATGCAGAGACTGGTCTTATAAGGCAGGCAAGTGAGCAGAGAATTTCGAATCGTTGGAACAAACACTCAAGCCTGAC
CCAATCTTTGCATCAACTGAAAAGAGATATTATCCTTATTCCTTTAGGTACCTGTGGACCCTATGCACACTGATCTTTTTATTTGTCAATTCCATGAACA
CTCTTGCATTCTGATTCTGCACTAGCAAATATAGTTTATATTGCGT