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Detailed information on CNT30553169

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30101533	Oryza glaberrima	Oryza rufipogon	73.92	14.2	97.57	411	forward
CNT30575554	Oryza glaberrima	Oryza barthii	53.24	100	100	296	forward
CNT30116327	Oryza glaberrima	Oryza nivara	71.94	89.09	100	400	forward

Expression of CNT30553169

Peptides detected in this lncRNA

>peptide 1 (45 aa)
SPSPPCSLASPPIPPHSVVHPKSKKPEWESSFLLSSPSSSCRPPG*

>peptide 2 (42 aa)
MSALMLCPTTIPPMVARVACSCSSLLRWLVALVGLLAHHGFFF

Sequence

>CNT30553169
TTCTCCTTCACCCCCTTGCTCTCTAGCTTCCCCACCCATCCCTCCTCACTCTGTAGTCCACCCTAAATCCAAGAAACCAGAGTGGGAGAGCTCCTTCTTG
CTCTCCTCGCCATCATCTTCTTGCCGGCCGCCGGGATGATGCCATCTCCGCCGCCCAACGGCCGATCTCTGGGAACGCCGACCTCGCCACGGTAGCTCTG
GAGCGCGGCCACACCGTCGTCAACGCGCAGCCGTGGGTTCGCGCCGCTGTTCCCGTCGCCTCGAGGCGAATCCGGTTGAGCTACTGCGCCACCAGCTTCG
CCTCACCATTCTCTCCAAAACGCCCCAAGAATCTCTCAGAACCGTGCAGCGAGGAGGGAGATCGACCACCGTCTTCTCCAACTCCGATCTAGTGCCTCCG
TCGTCGATTCCCGTTCAACCGGTGAGGATGTCGGCGTTGATGTTGTGCCCTACTACTATCCCGCCGATGGTGGCGAGGGTAGCGTGTAGTTGCAGTTCGC
TCTTGCGCTGGTTGGTTGCCCTTGTGGGGTTGTTGGCACACCATGGGTTTTTCTTT