Detailed information on CNT30553165


BLAST search results

BLAST vs Swiss-Prot:
sp|A2XF66|H2B1_ORYSI, E-value = 1e-58

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30702570Oryza glaberrimaQuercus lobata5550.683253forward
CNT30379403Oryza glaberrimaManihot esculenta28.2623.1383.85130forward
CNT30196132Oryza glaberrimaPisum sativum25.2224.4787.07116forward
CNT30163372Oryza glaberrimaPistacia vera25.2220.1484.48116forward
CNT30597299Oryza glaberrimaFraxinus excelsior24.1320.2285.59111forward
CNT303693Oryza glaberrimaZea mays33.4844.6495.45154forward
CNT30606042Oryza glaberrimaGossypium raimondii3045.2586.23138forward
CNT30231835Oryza glaberrimaAnanas comosus58.2641.2385.45268forward
CNT3066775Oryza glaberrimaLeersia perrieri27.6133.0799.21127forward
CNT30619778Oryza glaberrimaCajanus cajan28.9120.0990.23133forward
CNT30360078Oryza glaberrimaLactuca sativa26.5215.486.07122forward
CNT30369945Oryza glaberrimaOryza glumipatula10066.0999.57460forward
CNT3052765Oryza glaberrimaAmborella trichopoda28.4825.7989.31131forward
CNT30575689Oryza glaberrimaOryza barthii79.3598.65100365forward
CNT30176425Oryza glaberrimaVigna angularis28.9115.8785.71133forward
CNT30114697Oryza glaberrimaEutrema salsugineum28.721.5386.36132forward

Expression of CNT30553165

Peptides detected in this lncRNA

>peptide 1 (33 aa)
INNTRHVYYFKSKPPIMIKHNLQSRHKFATTAT*

>peptide 2 (29 aa)
MSLMKEFMIDMALEEIPMSGCTCFRTLKM*

Sequence

>CNT30553165
CAATAAATAACACTCGACACGTCTATTACTTCAAATCCAAGCCGCCCATTATGATCAAGCACAATTTACAAAGCAGGCACAAGTTTGCAACTACTGCCAC
CTAGCACACTGCACACACGAGGGGAAAGGGAAGGAGAGAAGCATGGCATCGAAACCCTAGAGAGACAGGCCTAGTTGCTGGTGAACTTGGTGACCGCCTT
GGTGCCCTCGGAAACGGCGTGCTTGGCGAGCTCGCCGGGGAGGACGAGGCGGACGGAGGTCTGGATCTCGCGGGAGGTGATGGTGGGCTTCTTGTTGTAG
CGGGCGAGCTTCTCGAAGATGTCGTTGATGAAGGAGTTCATGATCGACATGGCCTTGGAGGAGATTCCGATGTCCGGGTGCACCTGCTTCAGGACCTTGA
AGATGTAGATCTTGTAGGTCTCGACGCTCTTCTTCGCCTTCTTCCTCCCCTTCTTGTCGC