Detailed information on CNT30553156


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10MW3|PDC2_ORYSJ, E-value = 3e-144

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3021436Oryza glaberrimaCitrullus lanatus13.2726.0985.7184forward
CNT30238282Oryza glaberrimaBrassica oleracea21.9625.8882.01139forward
CNT30658371Oryza glaberrimaTriticum dicoccoides26.3826.1882.63167forward
CNT30128751Oryza glaberrimaCorymbia citriodora17.3821.6182.73110forward
CNT30362074Oryza glaberrimaSorghum bicolor39.8144.7684.13252forward
CNT30369917Oryza glaberrimaOryza glumipatula91.6395.8796.03580forward
CNT30100594Oryza glaberrimaOryza rufipogon34.9159.7399.55221forward
CNT30113754Oryza glaberrimaFicus carica20.0631.0581.89127forward

Expression of CNT30553156

Peptides detected in this lncRNA

>peptide 1 (59 aa)
PQPSGSFSFWQLNQESPVSAITALSLFSIFWTCLKSTLTRSGSFGSLSSGWPSGTKILL*

>peptide 2 (75 aa)
AALRELQLLAIKPGVTSLGNHSTVTVQHLLDVLEEHIDAQRLIWLALQRLALRHEDPLVVLVSSGVLVDALSQLR*

>peptide 3 (29 aa)
MTHPNAGPFPTMTRSGCTIMALSFLRRKE*

Sequence

>CNT30553156
CCGCAGCCCTCAGGGAGCTTCAGCTTCTGGCAATTAAACCAGGAGTCACCAGTCTCGGCAATCACAGCACTGTCACTGTTCAGCATCTTCTGGACGTGCT
TGAAGAGCACATTGACGCGCAGCGGCTCATTTGGCTCGCTCTCCAGCGGCTGGCCCTCAGGCACGAAGATCCTCTTGTAGTTCTCGTAAGCAGTGGTGTT
CTTGTTGACGCGCTTAGCCAGCTCAGATAAGAACTCCTTCATCATGACGCACCCAAACGCCGGGCCATTCCCGACGATGACACGCTCCGGTTGCACAATT
ATGGCCTTGTCCTTCTTGAGGAGGAAGGAGTAGCCGACAGAGCTGTAGTCATTGAAGATTGGCCCTGCGAAGAGGTAGGCGTCGGCCGACTCGACGATCT
CGGCACAGAAGGCCGTGCCGATGAAGTGGGGGTGCGTCTCCGGCACGAGCCCCTTGGCCGACGGCATCACCGCGTAGGCGTAGCCACTGGCATCAACAAG
GTCGACGAAGGCCTTCCCTGCCTTTGCCACACGCAGCTTGGGGCCGCCAACGAGCACCGGCTTCACCGCCTTGTTCAGGAACTCGACAGTGGCCTCCACC
GCAGCCTCCAGACCCATCTTGTTACTCAACCTG