CANTATAdb - search

Detailed information on CNT30553135

BLAST search results

BLAST vs Swiss-Prot:
sp|Q75KD7|AOC_ORYSJ, E-value = 2e-46

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30692141	Oryza glaberrima	Oryza sativa	59.09	62	99.76	416	forward
CNT30361694	Oryza glaberrima	Sorghum bicolor	24.72	78.73	95.98	174	forward
CNT30596021	Oryza glaberrima	Oryza meridionalis	66.62	97.71	98.29	469	forward
CNT30148558	Oryza glaberrima	Brachypodium distachyon	8.95	25.93	98.41	63	forward
CNT30101081	Oryza glaberrima	Oryza rufipogon	69.6	40.23	100	490	forward
CNT30116289	Oryza glaberrima	Oryza nivara	68.89	62.02	100	485	forward

Expression of CNT30553135

Peptides detected in this lncRNA

>peptide 1 (29 aa)
RCYIFYFQEKKIIAAKHTHGHELEYIFEH*

Sequence

>CNT30553135
GCGTTGTTATATATTTTATTTTCAGGAGAAAAAAATAATAGCAGCAAAACATACACATGGACATGAGCTGGAGTATATATTTGAGCACTAGTACAAAAAC
AAACAAACAAATAGCATGAGCTCTCCGTAGTGGCGGTCGTTGTAGTTGCGGATCACAATCATATCATTTCGATATTCCAATCCACCTACTACCAAGAAGC
CTCTTCTTGTTCGGATCAGTTCATCGGCTCATCGCAGGGAGGAAACAAATATCTTGTCCTCGATTCCTCTTCCTTATCAGTGATACGATACACACCGCAC
ATGTCGCAATTAACACTAAACTAATCAGGCAGCTCGATCTGCATCTCCATCAATTATTGGCAGAGTAGTAACAGTAGCAATTGGAACTTGGAAGTGATGT
ACAGCGCGGGTTGAGCTAGTTGGTGAAGTTGTTGAGGCAGGCGTGGGGCTCGGTGGCCTTGGCGGCTGGCGTTGGCTCGACGGTCGGGGACGGCGGGACG
GGCGTGCAGAGCAGCTCCCGCGGCAGGTCGGGGATGCCCTTGAGGTAGAAGGTGTAGAAGATCTTGAAGGGGAAGACGATCTGGTTGAGCTTGACCTGGC
CGTAGTCGCCGAAGTAGAAGCTGTAGATGGCCTCGTAGCGGTCGCCGTTGCGCTCCGGCACGTGCTGGATCAGGATGCAGATCCCCGCCGAGATCCCCAG
CCGC