Detailed information on CNT30552873


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691495Oryza glaberrimaOryza sativa89.7164.3897.811325forward
CNT30369691Oryza glaberrimaOryza glumipatula78.4786.6299.651159forward
CNT30575108Oryza glaberrimaOryza barthii86.6676.2499.921280forward
CNT30603681Oryza glaberrimaOryza punctata41.342.6389.51610forward

Expression of CNT30552873

Peptides detected in this lncRNA

>peptide 1 (76 aa)
ASPPPPGATCVAAFASLPRPHAAPRAPARARARAPSSRRVRRPDPAHAPPPFEPPSPAPPRATARRSRTDLVNSPP*

>peptide 2 (72 aa)
SPLLLRRERHVSRLLLRFHGHMPRHGHPRARAPARRPHAASAAQIRRTLLPLLSRHRRHRRARRRGAAAPIS*

>peptide 3 (74 aa)
MKIVPSVLIMKAAHVNCLVHPDHLLLFTLIRLRRLYIVYWLPLLNVSLITHDMLAWKGSFELIMRPVTILSSEL*

>peptide 4 (45 aa)
MPFSASSRRPLPSTVPVRRARGFSDSCKGTVTSLWQQLHILQENL*

>peptide 5 (52 aa)
RLSSSAGSDMCRGFCFASTATCRATGTRARARPRAVLTPRPPPRSGARSSPF*

>peptide 6 (34 aa)
MRLNNICLLLEGKRCMTVLKQMKNSSFYEVNFCC*

Sequence

>CNT30552873
TCGCCTCTCCTCCTCCGCCGGGAGCGACATGTGTCGCGGCTTTTGCTTCGCTTCCACGGCCACATGCCGCGCCACGGGCACCCGCGCGCGCGCGCGCCCG
CGCGCCGTCCTCACGCCGCGTCCGCCGCCCAGATCCGGCGCACGCTCCTCCCCCTTTTGAGCCGCCATCGCCGGCACCGCCGCGCGCGACGGCGCGGCGC
AGCCGCACCGATCTCGTGAATTCCCCTCCCTGACCACTCTCCCGGCCCCGGCCCCGGCCACCACCTAAATCGCAATGCCTTTCTCCGCTAGCTCCCGCCG
TCCCCTCCCCTCGACGGTGCCGGTGCGGCGCGCGCGTGGTTTCTCAGATTCATGCAAGGGGACGGTGACAAGCTTGTGGCAGCAACTGCACATCTTGCAA
GAAAATCTTTAGGGTTTTTCAGACCATACCGATGATTTTCTTGCAAGTTGTGCAGTTGTTGTCTCAAGCTTGCTGCCTCCCTTTGCCAAAACTATCAAGT
GAGAAAGCAGGGTAGAGTTATTCAATTACAGGCACACAAGACAAAATTAAAGTAATAAACATGTCTGACCAACAAACACAATGATTAATAACAAAACTCT
TGTGGCATGAGATAATATTGAAGCATGATGCTTACAACAGTTATAATATGAAAACTAGATGGAGGCAGTGCCACCAGGCAATTGCAAATGAACTCATCAA
CATATGAACATCTAGCAAGGTGAGTAAAGTCTGGTAAGGTGCTAGATGAGTAAAGTCTGGTAAGGAAGTCAAACATCTAATATGTATGAAAATTGTTCCT
AGTGTTCTTATAATGAAGGCTGCACATGTAAACTGTTTAGTCCATCCTGATCATCTATTGTTGTTTACTCTGATCAGATTACGTCGTCTCTACATTGTGT
ATTGGCTTCCACTGCTGAATGTTTCTCTTATTACCCATGACATGCTTGCTTGGAAGGGCAGTTTTGAGTTGATCATGAGGCCAGTCACAATTCTTAGTAG
TGAATTATGAATTTCTAAATGCATTATGTTAGTTTCATGGCTTGATCCTTGGTTTCTTTGTTTTGTAGGTTTGCAGGAATTTCTCTAGGAATGCCCAGTG
AGTGATCCTGTAAATTTTGGAGTTGATTGTTCATCAGAATAGCACTATAATTTTCCTGTCACCTGTGCTTTGGCAGCGGAACGTTCATTGTCCCATGCTA
CTCAGCTTTGTACTTTTGTAAATCAAATGAGACTGAATAATATATGTTTACTTTTGGAAGGAAAAAGATGTATGACTGTTCTCAAGCAAATGAAAAATTC
CAGCTTTTATGAAGTTAATTTCTGCTGTTAACATGCTACCTAGTGCATTCCTAGAATCCTAGTTAGTGTCTTAAACCTTGGTTGATGAGCGTTCCAAGCT
GCTTATCCCTATTCAGCAGAATGCAAGGTTTGTAGGGATTACTATTTGAGAAAGGAAAACCAGTGCCTAGGTGCTTT