Detailed information on CNT30552861


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690856Oryza glaberrimaOryza sativa20.537.5891.13124forward
CNT30150273Oryza glaberrimaBrachypodium distachyon18.8450.2282.46114forward
CNT30100556Oryza glaberrimaOryza rufipogon41.3232.0588.8250forward
CNT30575248Oryza glaberrimaOryza barthii51.07100100309forward

Expression of CNT30552861

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MPRSLHARVSAHLREGQGLYCPDWLLFPS*

>peptide 2 (52 aa)
HRLAAAGGGGHRGRRWRRRRRDCSSRTAGPLPRARDALALLYGNARAALVGG*

>peptide 3 (73 aa)
MSGAGWCDTPVSAFRNATLSSRARVRPPSRRSGSILSRLATISIIVGLIKGLPSTHLQAVSRTFSICSSHPVP*

>peptide 4 (97 aa)
QTSGGRRGRSPRPPVATATAGLLLPDGRTAAARPRCPCTFIRQCQGCPGGRVAASLPCEVAHSGCSAKCSSDLYRAAASVAIEELAGTGTYVWRRMV*

Sequence

>CNT30552861
CACAGACTAGCGGCGGCCGGCGGGGGAGGTCACCGCGGCCGCCGGTGGCGACGGCGACGGCGGGATTGCTCCTCCCGGACGGCCGGACCGCTGCCGCGCG
CCCGCGATGCCCTTGCACTTTTATACGGCAATGCCAGGGCTGCCCTGGTGGGAGGGTAGCCGCTTCCCTTCCCTGTGAGGTGGCGCACTCGGGGTGTTCG
GCGAAATGCTCCAGTGACTTGTACCGGGCGGCGGCGAGCGTGGCCATCGAGGAGCTCGCGGGGACCGGCACATATGTCTGGCGCCGGATGGTGTGACACC
CCAGTGAGTGCGTTCCGCAATGCCACGCTCTCTTCACGCGCGCGTGTCCGCCCACCTTCGAGAAGGTCAGGGTCTATACTGTCCAGACTGGCTACTATTT
CCATCATAGTTGGCCTCATCAAAGGATTACCATCGACGCACTTGCAAGCAGTTTCAAGGACCTTTAGCATTTGCTCTTCACACCCTGTGCCTTGAAGTGT
TGAATCCAGCACCTCAATCTGCTTTCCCTCTGATATCATCTCCTGTACCCATGGGACAAGTTCCTTTGAAGTAGATAGTATTGGAACTGGCCTCCTCCCA
GTGAG