Detailed information on CNT30552747


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695229Oryza glaberrimaOryza sativa21.2745.2189.16406forward
CNT30109186Oryza glaberrimaOryza longistaminata31.4346.0195.5600forward
CNT30100090Oryza glaberrimaOryza rufipogon16.8728.495.65322forward
CNT30575420Oryza glaberrimaOryza barthii98.3293.1199.841877forward
CNT30115521Oryza glaberrimaOryza nivara20.8535.593.97398forward

Expression of CNT30552747

Peptides detected in this lncRNA

>peptide 1 (97 aa)
MRLFLPPPPRQVLYYLFEPFCCSKLILILGEFIDIEAFIEYVSFCFHFGSINSYNWCFGILLLIWHPCGHKFASWFHILHKHMHTSCLYNAWQDESL*

>peptide 2 (68 aa)
MFPFASILVQSIHTIGASVYCYSFGTLVDINLLPGSTFFTNICTQAVCTMLGKMNLCDYSVFAICVIN*

>peptide 3 (81 aa)
MCISEYIFCGKLLWQSQLLSRVKIFMWLALKGRCLMADNLQKIGGLIRRIAPYATWHFEMTPNLLFNVLSQTGFGDCSGAK*

>peptide 4 (48 aa)
MSVISFPGKYLLKIYVTAPKCIRVWKMLQTKAIQTHIHLFTVSIRVIL*

>peptide 5 (52 aa)
MKPCIYTFKTISCPRRCCYMMKEERLIGLCLASFGYSTKILGNSLILFLIQQ*

>peptide 6 (35 aa)
MASRRSFRDCLRKVFDTLFFFRDCLRKLYGCAALW*

>peptide 7 (43 aa)
TDGTILIFTWQELCKAFPFLSVSCLPLCQYIIFKFQKLLEILL*

>peptide 8 (29 aa)
MALLTSNCIAIQVLALGIFQAILLSHIQN*

>peptide 9 (87 aa)
MLAFRFQVTSMLTWLIGGWLQGEASEIVSEKFSILSSSSEIVSGSCMAVQLFGDIKEKITIWREAGFMVGEKRLVLFLSQFFLSRSL*

Sequence

>CNT30552747
ATACTGATGGCACAATTTTAATTTTTACTTGGCAGGAGCTCTGCAAAGCATTTCCATTTCTCAGTGTTTCTTGTTTACCACTTTGCCAATATATAATTTT
CAAGTTTCAGAAGCTTCTTGAGATATTATTGTGAGGTAATAATATGTTGCTCATGCTAGCAGCTGAGAACTCTGCCATCTGAATTAAAATTTGGTACATC
TCCATCTAATCCCATGATAAATAGTGATAACCTATTTCTGAAATATTTAGATCCCACGCTTTTTTAATCTCAAATTATGAAACCCTGTATATATACATTC
AAGACAATTTCCTGTCCAAGACGATGCTGCTACATGATGAAAGAAGAAAGGTTGATAGGTCTATGTCTAGCTTCTTTTGGTTATTCAACTAAGATATTAG
GCAATAGTCTTATCTTATTTTTGATACAACAATAAGTGACTTCATGTTCACATTTTTTTACACTGAAATTGATTGTGCAACCTAGATTTCTTTGCAGTTT
TACTGGCTTGTTCATACGATGGAGAGGATAGTGTAAGTTCAGACCCACCAAATGCGTCTTTTCCTACCTCCACCCCCAAGACAAGTTTTGTATTATCTCT
TCGAGCCTTTCTGTTGTAGCAAGCTGATTCTGATTCTCGGTGAGTTCATAGATATCGAGGCATTCATTGAGTATGTTTCCTTTTGCTTCCATTTTGGTTC
AATCAATTCATACAATTGGTGCTTCGGTATACTGCTACTCATTTGGCACCCTTGTGGACATAAATTTGCTTCCTGGTTCCACATTCTTCACAAACATATG
CACACAAGCTGTTTGTACAATGCTTGGCAAGATGAATCTTTGTGATTATAGTGTATTTGCTATTTGTGTTATCAACTAACTGTTGGCAGAATCGCTGGTA
ACTGTATTGCCATGGCCCTGCTCACCAGTAACTGTATTGCCATTCAGGTTTTAGCCCTTGGCATCTTCCAAGCCATTTTGCTTTCACATATTCAGAATTG
ACTGAAATTCATTTATCGTTACAACTAATGTCGGTGATCAGTTTTCCTGGAAAATATTTGTTGAAAATATATGTAACAGCACCCAAATGTATTAGGGTGT
GGAAAATGCTTCAAACTAAGGCTATTCAGACCCATATTCACCTATTTACAGTGAGCATTAGGGTCATTTTATAGAAAACGTTGTCGAGGAGATCTAGAAG
TTATTATAAGTTAGGTCTGCTGCTTCATTATAATAGATCATATGTGTATTTCTGAATATATCTTCTGTGGCAAGCTGCTTTGGCAATCCCAGTTGCTGTC
CAGAGTAAAGATTTTCATGTGGCTTGCGCTAAAGGGCAGATGCCTCATGGCTGACAATCTACAGAAAATAGGTGGCCTCATCAGGCGAATTGCTCCCTAT
GCAACCTGGCATTTCGAGATGACACCCAACCTTTTGTTCAATGTGCTTTCACAAACAGGATTTGGAGATTGCTCAGGAGCTAAGTGAATGTTGGCTTTCC
GCTTCCAAGTGACCTCAATGTTGACTTGGCTGATTGGCGGATGGCTTCAAGGAGAAGCTTCAGAGATTGTCTCAGAAAAGTTTTCGATACTCTCTTCTTC
TTCAGAGATTGTCTCAGGAAGTTGTATGGCTGTGCAGCTCTTTGGTGACATCAAAGAAAAAATCACAATCTGGAGGGAGGCAGGCTTCATGGTAGGCGAA
AAACGATTGGTATTATTCCTTTCGCAGTTTTTTCTCTCCCGCTCTTTGTAACCGGTTTTGACAGCTTCTTGTGGATGCTTAGTTTGTAACACCATCTTCT
AATCTTAATGAATTTGCTTAGCCTACTCTTGGGCCAGTCTGGCTAAAATAAATGCAATCAGAGTTATACTTCATTTGTCGGAAACATAACTTGTAAAAAT
AAAACCAAT