CANTATAdb - search

Detailed information on CNT30552653

BLAST search results

BLAST vs Swiss-Prot:
sp|Q8GU88|AB39G_ORYSJ, E-value = 4e-53

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30369558	Oryza glaberrima	Oryza glumipatula	92.59	97.81	99.84	625	forward
CNT30100172	Oryza glaberrima	Oryza rufipogon	90.96	59.38	99.51	614	forward
CNT30575264	Oryza glaberrima	Oryza barthii	97.63	100	100	659	forward
CNT30116040	Oryza glaberrima	Oryza nivara	43.7	100	99.32	295	forward

Expression of CNT30552653

Peptides detected in this lncRNA

>peptide 1 (35 aa)
QKLCIGISIIAFGGIFVTHREASNACLPEAYPQSI*

>peptide 2 (47 aa)
MLAYLRHIHRVSDIVEGDRQRSKWKYHSSLPGVSSCNLSSSCICYTC*

>peptide 3 (66 aa)
MKRMLKSMMYPSNAPTPIQYQFASTKMPRTLRTWTPSVSLLCVGSTTCARIRLLLSYLNPNLDCQV*

Sequence

>CNT30552653
GTCAAAAATTGTGCATCGGGATTAGCATAATAGCATTTGGTGGTATATTTGTTACACACAGGGAGGCTTCCAATGCTTGCTTACCTGAGGCATATCCACA
GAGTATCTGATATTGTCGAAGGTGATCGACAGAGGAGTAAATGGAAGTACCATTCCTCTCTTCCTGGTGTCAGCTCCTGTAATCTCTCCTCTTCCTGCAT
TTGCTATACTTGTTAAAAGGACACAACAAAATTGCATATCTTGTTCAATGCCATAATACAGAGGAATGTACTAAAAAGACTGACCATCAGAAGGTGAATT
CTGGGAATCTGTTCCAAGAGTCAGCAGCTCAACATTTTCTCCGAGCTGAGATGATACTCACGGTCAAGCCATTCAAGGAACAGAATGAAGAGGATGTTGA
AGAGCATGATGTATCCAAGTAATGCGCCAACGCCAATCCAGTACCAGTTTGCATCGACAAAGATGCCACGTACCTTAAGGACTTGGACACCAAGCGTGTC
GTTGCTTTGTGTCGGATCAACAACCTGCGCAAGGATTAGGTTGCTTCTGAGTTATCTAAATCCAAACTTAGATTGTCAGGTTTGAGTTGGTGCAGGAGAC
ACTGCATTACCTTGTTCCAGCTGTGGCCAAGGAACTCATTAACTGCTATGGCATTCTGTGCATACATCAGAGGAG