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Detailed information on CNT30552647


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520016Oryza glaberrimaSetaria italica24.1229.2787.03185forward
CNT30666600Oryza glaberrimaTriticum dicoccoides25.9523.6383.92199forward
CNT30460493Oryza glaberrimaSaccharum spontaneum25.9522.9585.43199forward
CNT30139889Oryza glaberrimaLolium perenne25.9521.786.43199forward

Expression of CNT30552647

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MNLIVMESSHQKALNSALQEAEMPLEKLMLPVKLPWQFVGERLAERAVDLLELQIEKPVKGCRMVLHSVKEPQTCH*

>peptide 2 (96 aa)
MKWEVLEKQMKREQHEFVDQQLQAEVPGRRHKMGLPVQGAQMGLQVVPLNVMRWAQKYLAAQVQHSIQKRGRQECLQNQSLLLKQAGKDLHLQQVQ*

>peptide 3 (34 aa)
MSLWTSSCRLRCLGGDIRWDCLFRVHRWVCRWYL*

Sequence

>CNT30552647
TGATGAACTTGATTGTAATGGAAAGTTCACACCAGAAGGCATTGAATTCGGCACTGCAAGAGGCTGAGATGCCCCTCGAGAAATTGATGTTGCCTGTGAA
GCTGCCATGGCAGTTTGTGGGGGAAAGGTTGGCTGAGAGGGCTGTAGATTTGTTGGAGCTGCAAATTGAGAAGCCTGTGAAGGGATGTAGGATGGTGCTC
CATTCTGTGAAGGAGCCCCAGACATGCCATTAATGCCAGTCCCTGGAACTGGTTGCATAAAATTGTTTGATTGGCCTGATGGTACAGATTGAGGCATTTG
TGAAGGAGCAAATGGTGTGGCAACATTCTGAGGGATTGTAGATGGATTAGTGGCTGCAGGATGAGGATAGGGTGCCCCTGCTTGAGGTGCTTGAGAAGCA
AATGAAGTGGGAGGTGCTTGAGAAGCAAATGAAGCGGGAGCAGCATGAGTTTGTGGACCAGCAGCTGCAGGCTGAGGTGCCTGGGAGGAGACATAAGATG
GGACTGCCTGTTCAGGGTGCACAGATGGGTTTGCAGGTGGTACCTCTGAATGTGATGAGGTGGGCACAAAAATATCTTGCTGCCCAGGTGCAGCATTCGA
TCCAAAAGAGAGGTCGCCAAGAGTGTCTCCAAAACCAAAGCTTGCTGCTGAAGCAGGCTGGAAAGGATTTGCATCTGCAGCAGGTTCAGTAGCATGGAAA
GAACCAGCAGGTGCAGCATTTGTCTGAGAAACTGCAGGAGTTTCTTCATGAACAGCCTTGAAAGGCG