Detailed information on CNT30552642


BLAST search results

BLAST vs Swiss-Prot:
sp|P85087|GLNA_VITSX, E-value = 2e-12

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691310Oryza glaberrimaOryza sativa40.3187.7696.12258forward
CNT30671311Oryza glaberrimaSetaria viridis17.8140.1490.35114forward
CNT30225888Oryza glaberrimaHordeum vulgare18.7523.1791.67120forward
CNT30170Oryza glaberrimaZea mays13.2830.4789.4185forward
CNT30364720Oryza glaberrimaSorghum bicolor27.6627.9291.53177forward
CNT30369692Oryza glaberrimaOryza glumipatula42.541.5399.63272forward
CNT30100365Oryza glaberrimaOryza rufipogon45.7849.2499.32293forward
CNT30575092Oryza glaberrimaOryza barthii48.4440.26100310forward
CNT30115740Oryza glaberrimaOryza nivara43.2872.8996.39277forward

Expression of CNT30552642

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MERHGELGRTMTRMSWCQEAASGLPDDGVDVGGLVPAGEPALVALAVGGDVLLVPELELLNGGLDDLVATIVPHRLGA

>peptide 2 (36 aa)
KNQRRHLLKNGGSSNAKATAIGSPASPARTLYKGDH*

>peptide 3 (60 aa)
MADEQCSSSSSMQPNRNGMRIFFGVIFFFFSFLFFLLLPAQMQFTRSSDQWSDTASWGGR*

Sequence

>CNT30552642
AAAAAATCAACGGCGTCATCTATTAAAAAACGGAGGGAGCAGTAACGCAAAAGCCACGGCTATTGGAAGCCCAGCAAGCCCAGCAAGAACTTTATATAAA
GGTGATCACTAATAACAATGATGATAAAACCACATGTGGAAAGGAGGACGATGATCCACAGGATGGGACAAGTACCGTAGGTACGGCCATTATTGGAGGA
TTACACAAGAGCACCCAAACGCACTCACCCAAAAGACGAAGAAAAAGCTAATCTAAATGGCAGATGAGCAATGTAGTAGTAGTAGTAGCATGCAACCAAA
TCGAAATGGAATGAGAATTTTTTTTGGCGTGATTTTCTTTTTTTTCTCTTTCCTTTTTTTTTTACTTCTCCCAGCACAAATGCAATTCACCAGATCGTCC
GATCAATGGAGCGACACGGCGAGCTGGGGAGGACGATGACGAGGATGTCGTGGTGTCAAGAAGCCGCTTCAGGGCTTCCAGATGATGGTGTTGATGTCGG
CGGTCTCGTGCCTGCCGGTGAGCCGGCGCTCGTTGCCCTCGCCGTAGGCGGAGATGTGCTCCTTGTGCCTGAGCTTGAGCTTCTCAATGGCGGACTTGAT
GATCTCGTAGCCACCATCGTTCCTCATCGACTTGGTGCTG