Detailed information on CNT30552636


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691502Oryza glaberrimaOryza sativa57.3283.2100317forward
CNT30671312Oryza glaberrimaSetaria viridis16.8228.3595.793forward
CNT30667282Oryza glaberrimaTriticum dicoccoides17.7222.0290.8298forward
CNT30364531Oryza glaberrimaSorghum bicolor1729.3896.8194forward
CNT30595654Oryza glaberrimaOryza meridionalis58.0554.8795.95321forward
CNT30369561Oryza glaberrimaOryza glumipatula68.1761.699.73377forward
CNT30100228Oryza glaberrimaOryza rufipogon81.0180.14100448forward

Expression of CNT30552636

Peptides detected in this lncRNA

>peptide 1 (66 aa)
LYKNTQIKIKNNLWHKKSSGNHKKERPDNPILKLLPRFLIVQIIGQLIKQPESKAASTDTLTHREK*

>peptide 2 (46 aa)
YTRIPRSRLRTTYGTRNQAAITKKKDQTIQYLNYSPDFLLFRLLGS*

>peptide 3 (37 aa)
MGRSRRTPAAAPPSAPPPSLSPLSFSLLAAVCGSVEGC

Sequence

>CNT30552636
CTATACAAGAATACCCAGATCAAGATTAAGAACAACCTATGGCACAAGAAATCAAGCGGCAATCACAAAAAAGAAAGACCAGACAATCCAATACTTAAAT
TACTCCCCAGATTTCTTATTGTTCAGATTATTGGGCAGCTAATCAAGCAACCAGAGAGCAAAGCTGCAAGCACAGACACACTGACACACAGGGAGAAGTA
ATAATAAGTTACACATGGAATTACGGATGGAATTAAGCTGTAGAGCACAAGAGGATACAATAATCTAAGGGTTGATTTGGGGGGATTTTTTTTTTTCATT
CGGTGAGGCGGGCGACGACGGGGTACTTGGCCTGGAACTTGGTCTCCCAGTCGGCGAGGACGCCGAGCTCCTTGTCGGAGAGGCCGGAGAGGTGACGTCG
TAGACCTTGCCGCGGACGGAGACGTAGATCGGCTTCGATGGGTCGCTCCCGTCGTACGCCCGCAGCTGCGCCGCCGTCAGCTCCGCCGCCATCTCTCTCT
CCTCTCTCTTTCTCTCTCCTCGCGGCTGTGTGTGGATCAGTGGAAGGTTGTTG