Detailed information on CNT30552605


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3066950Oryza glaberrimaLeersia perrieri71.5968.7688.29504forward
CNT30369666Oryza glaberrimaOryza glumipatula78.8498.496.58555forward
CNT30105984Oryza glaberrimaOryza longistaminata57.122.0998.51402forward
CNT30150498Oryza glaberrimaBrachypodium distachyon11.9329.4789.2984forward
CNT30100301Oryza glaberrimaOryza rufipogon94.18100.1597.59663forward
CNT30575140Oryza glaberrimaOryza barthii72.8770.18100513forward

Expression of CNT30552605

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MCSFYSKLRMGSATKITQLVQLRDNSMKLNKCSGAAD*

>peptide 2 (48 aa)
MVPAGTPPTSTSCSSSTITAISSSTTTICPISTIGTSIQGATITTTIS*

>peptide 3 (41 aa)
MATVSCLRRQCHYRTKYNRSIIPILFLTQKALFEGSNSLSI*

>peptide 4 (92 aa)
MDGTCWNPAHQHLLLQLHHNCHILQHHHHMPHKHHRHLHTRSHHNHHHILIQIQHYLHSHTLLCHNHMQYYHNNLLQPIGNQHHTHSHRCCHC

Sequence

>CNT30552605
AGCAAGGTCAATAAACAGTCAAATTAGAATATTTAAGCAAATCCGTTAACGGTTCCCTTACATATAAGGGCAGATGGCAACAGTTAGCTGCTTGCGAAGG
CAATGTCACTACCGCACAAAATATAATAGGTCAATCATACCAATACTGTTCCTAACACAAAAGGCTTTGTTTGAGGGTTCTAATTCTCTCAGCATATGAA
AACTAACGGAATACAACATAGCTTTCATGTGTAGCTTCTACAGCAAACTACGGATGGGTTCAGCGACTAAAATTACACAGTTGGTCCAGTTACGAGATAA
TTCGATGAAACTAAATAAATGTTCTGGTGCCGCTGATTGAGTAACCCAAGATAAAACGCTGATTTTCCAGGAGGTGCACTTATTGTATCCTAGAAAAAAC
TCTCAAGAGTTCACTCATTTCCCATATGGATGGTACCTGCTGGAACCCCGCCCACCAGCACCTCCTGCTCCAGCTCCACCATAACTGCCATATCCTCCAG
CACCACCACCATATGCCCCATAAGCACCATAGGCACCTCCATACAAGGAGCCACCATAACCACCACCATATCCTGATCCAAATCCAGCATTACCTCCATA
GCCATACCCTCCTCTGCCATAACCATATGCAGTACTATCATAATAACCTCCTCCAGCCGATCGGTAACCAGCACCATACCCATAGCCACCGCTGCTGCCA
CTGC