Detailed information on CNT30552492


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30184327Oryza glaberrimaSecale cereale6.0661.586.26131forward
CNT30398990Oryza glaberrimaTriticum turgidum5.9229.9185.94128forward
CNT30459409Oryza glaberrimaSaccharum spontaneum6.4839.5590.71140forward
CNT30603626Oryza glaberrimaOryza punctata79.568.3186.851718forward

Expression of CNT30552492

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MSDGIFEPKIEGKRRISVGACYVLQFFETM*

>peptide 2 (62 aa)
MDVRYSDRFSMCWVLFSEFVVVIRCSEITALYLGPMQSAKSLSCQKDVHGFSIICKLEVGLP*

>peptide 3 (42 aa)
MLFSSNLCSIILHYHQMLLLPIQYSASSCIVHCFILFKVCLFL

>peptide 4 (30 aa)
MSVSLNYIHMINLETQYVAKNHTQLNHICI*

>peptide 5 (31 aa)
MYPCCSGFVALQPFCLRYWHLLFRKPFSNSF*

>peptide 6 (33 aa)
MAGTRGGFELLHMVAPSMRQQPHYLQERHKIIR*

>peptide 7 (35 aa)
MITCGFLASCAVAASSLLPPSAKSISKKRKSCQFP*

>peptide 8 (33 aa)
MQRNYCAVSWTNAISEVLIVPKGCAWIFHHLQT*

>peptide 9 (33 aa)
MMSTVSNVNSRQIRFIPFWCLVSFCIFHERWHF*

>peptide 10 (39 aa)
MWDMRSTSASECYSCSVFSAYYSRLIWTNLSIQLTLVFV*

>peptide 11 (36 aa)
MNIIPSAAVKFLCVDGLFLKIYIFYVYNCLSSLLVN*

>peptide 12 (36 aa)
MLSDSHSSNISRCGICVAQVHQSVIVVQSSVLIILD*

Sequence

>CNT30552492
GCCGCCTGCGCGGCCACAACCCTCTCCCCGCGACGTAATTAAACTAATCCCCGCTTAACCCAAATCTTCCCCTCCTAATCCCTTTCGCCGCGCTCCGTTC
CCTCCCTCCTCTCGTCCCCTTCGCCAAAAAAGCCGAACTCCACTACGCCAATTTTCCTGCCTTTTCTACCCCCCACTTGGAATTCTGGAAACATCGATTC
GATCCTTCTAGACCCTTCTCCGCCCCCGTTTTAAAGTGCGCCGGCCTCCCACCCGTCGCTTCATCGCTCGCGGTCGCAGTCGCAGTCGCAGTCGCCCACA
CCCTTGCCGCACCATGGCTGGAACCCGCGGCGGATTCGAGTTATTGCACATGGTGGCACCAAGCATGAGGCAACAACCGCATTACTTGCAAGAAAGGCAC
AAAATCATTAGATGATTACTTGTGGCTTTCTTGCAAGTTGTGCAGTTGCTGCCTCAAGCTTGCTGCCTCCCTCTGCCAAATCTATCAGCAAAAAAAGAAA
ATCATGTCAGTTTCCTTGAACTATATACATATGATTAATCTAGAAACGCAGTATGTTGCCAAAAATCACACACAACTCAATCACATATGCATTTGAGATG
AGGTAAAATGCTATCTGATTCACATAGTTCCAATATCTCAAGATGTGGGATATGCGTAGCACAAGTGCATCAGAGTGTTATAGTTGTTCAGTCTTCAGTG
CTTATTATTCTAGATTAATTTGGACCAACTTGTCAATTCAGCTGACACTTGTTTTTGTCTAGTGCTCCAGTAGCTTGGTTGTTTCATCATCATTAGACTT
TTAAACCTTTGGTCCTAAACTCCTAGCTGAAAATTTTGCACACTGAACTTCCCTGTGTTCTAAGGAAAAAAAAATCTAGACATAACCTTGCTGATCTGTA
TTATGGACTGGCCATTGGAGTGCATAATGCATAACTGCTGATCACTTTGTTGGCACAAAACTTACGCATAGACATAGGAGGTACTTATGTATAATTGTGT
CTTTAATCAGGACTTTGTTTTCAACCATTTTGTTGATATAACAGTTATACTGTAGTAATGATGAGTACAGTCTCCAATGTAAACTCAAGGCAAATCAGAT
TTATCCCTTTTTGGTGCTTGGTATCTTTTTGTATTTTTCATGAGCGATGGCATTTTTGAACCCAAAATAGAGGGAAAGAGAAGGATCTCTGTGGGGGCAT
GCTATGTACTACAGTTCTTTGAGACCATGTAGGTGTGGATGCTTGTTTTGACCTTTTCCTTAACATATAGAAAGAATAAACATTAAATAAATGATGACAT
GGAAATGAAATTCATAAAGGAGTACATAAGCTAGTACTCCTGAAAATATCACTTCATATTCCCCCATGATTCAGTAACATGAATATCATACCATCAGCAG
CAGTGAAATTTTTATGCGTAGACGGTTTGTTTCTTAAGATATATATTTTTTATGTTTACAATTGTCTGTCGAGTTTACTGGTCAATTGAGCAACAACGGT
ACTTTTAACTGTTAATATCACTTGGTTTGCTATGTATCCTTGTTGTTCTGGCTTTGTTGCTTTACAGCCATTCTGCTTACGCTATTGGCATCTGTTATTT
AGAAAACCATTTTCTAACAGTTTTTAGATTTCCTTTCGAGTCTCCAACTGTTTTTAACCTCCAAGTTGCCACATAATGCATAAATATACCGAGTAAGTTT
GCCCCCCTCTGAAATATGGATGTTAGATACTCAGACAGGTTCAGTATGTGTTGGGTGTTGTTTTCTGAGTTTGTGGTTGTCATAAGATGCAGCGAAATTA
CTGCGCTGTATCTTGGACCAATGCAATCAGCGAAGTCCTTATCGTGCCAAAAGGATGTGCATGGATTTTCCATCATTTGCAAACTTGAGGTTGGCCTGCC
CTGATGCCCTCAGATGCTGATGAAGTGTGTGGTTCATGAAAACGTGAGAAGCTAAGTAGTGGAGTAACGGGAGTGAGTACCAGTGTGGCCACTATGAAGA
AAGTTAATTACTGAGAAATTAAGACTTGAGCATGTTATTTTCAAGCAACTTGTGCAGCATTATATTGCACTACCATCAAATGCTTCTCCTGCCTATACAA
TACTCTGCAAGCTCTTGTATTGTACACTGTTTTATCTTGTTTAAAGTATGCTTGTTTTTGC